Literature DB >> 16628501

Ac-like transposons in populations of wild diploid Triticeae species: comparative analysis of chromosomal distribution.

Ahu Altinkut1, Violetta Kotseruba, Valery M Kirzhner, Eviatar Nevo, Olga Raskina, Alexander Belyayev.   

Abstract

Data are presented on the intra- and interspecific differences/similarities in chromosomal patterns of Ac-like elements (hAT family) in ecologically contrasted populations of three Triticeae species - Aegilops speltoides, Triticum urartu, and Hordeum spontaneum. Application of original computer software made it possible to precisely map transposon clusters and to link them to known chromosomal markers (rDNA sites, centromeres, and heterochromatin regions). From our data we can specify the most visible features of Ac-like elements chromosomal distribution: preferential concentration in chromosomal proximal regions; high percentage of clusters on the border between euchromatin and heterochromatin; complementary chromosomal arrangement towards En/Spm transposons (CACTA); population-specific insertions into centromeres; more differences in total cluster numbers between populations of self-pollinated species than between populations of cross-pollinated species. The application of statistical simulation (Resampling) method to analysis of data indicates that ecology may play a certain role in dynamics of Ac-like elements. Comparison of real Ayala distances, as well as real chromosomal distribution of Ac-like elements in populations of two species with different mating systems with the same but randomly simulated parameters, revealed that non-random population structure in the Mediterranean floral zone suffers and becomes chaotic in the Irano-Turanian zone.

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Year:  2006        PMID: 16628501     DOI: 10.1007/s10577-006-1048-3

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  28 in total

1.  Chromosomal distribution of reverse transcriptase-containing retroelements in two Triticeae species.

Authors:  A Belyayev; O Raskina; E Nevo
Journal:  Chromosome Res       Date:  2001       Impact factor: 5.239

Review 2.  The role of RNA interference in heterochromatic silencing.

Authors:  Zachary Lippman; Rob Martienssen
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3.  Comparative analysis of the chromosomal and genomic organization of Ty1-copia-like retrotransposons in pteridophytes, gymnosperms and angiosperms.

Authors:  A Brandes; J S Heslop-Harrison; A Kamm; S Kubis; R L Doudrick; T Schmidt
Journal:  Plant Mol Biol       Date:  1997-01       Impact factor: 4.076

4.  Insertions of a novel class of transposable elements with a strong target site preference at the r locus of maize.

Authors:  E L Walker; W B Eggleston; D Demopulos; J Kermicle; S L Dellaporta
Journal:  Genetics       Date:  1997-06       Impact factor: 4.562

5.  The Ty1-copia group retrotransposons of Allium cepa are distributed throughout the chromosomes but are enriched in the terminal heterochromatin.

Authors:  S R Pearce; U Pich; G Harrison; A J Flavell; J S Heslop-Harrison; I Schubert; A Kumar
Journal:  Chromosome Res       Date:  1996-08       Impact factor: 5.239

6.  An efficient method for dispersing Ds elements in the barley genome as a tool for determining gene function.

Authors:  T Koprek; D McElroy; J Louwerse; R Williams-Carrier; P G Lemaux
Journal:  Plant J       Date:  2000-10       Impact factor: 6.417

7.  The pericentromeric heterochromatin of the grass Zingeria biebersteiniana (2n = 4) is composed of Zbcen1-type tandem repeats that are intermingled with accumulated dispersedly organized sequences.

Authors:  V A Saunders; A Houben
Journal:  Genome       Date:  2001-12       Impact factor: 2.166

8.  Variability of the chromosomal distribution of Ty3-gypsy retrotransposons in the populations of two wild Triticeae species.

Authors:  A Belyayev; O Raskina; E Nevo
Journal:  Cytogenet Genome Res       Date:  2005       Impact factor: 1.636

9.  CACTA transposons in Triticeae. A diverse family of high-copy repetitive elements.

Authors:  Thomas Wicker; Romain Guyot; Nabila Yahiaoui; Beat Keller
Journal:  Plant Physiol       Date:  2003-05       Impact factor: 8.340

10.  Activity of the En/Spm-like transposons in meiosis as a base for chromosome repatterning in a small, isolated, peripheral population of Aegilops speltoides Tausch.

Authors:  Olga Raskina; Alexander Belyayev; Eviatar Nevo
Journal:  Chromosome Res       Date:  2004       Impact factor: 4.620

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  7 in total

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2.  Survey of sugar beet (Beta vulgaris L.) hAT transposons and MITE-like hATpin derivatives.

Authors:  Gerhard Menzel; Carmen Krebs; Mercedes Diez; Daniela Holtgräwe; Bernd Weisshaar; André E Minoche; Juliane C Dohm; Heinz Himmelbauer; Thomas Schmidt
Journal:  Plant Mol Biol       Date:  2012-01-13       Impact factor: 4.076

3.  Intraspecific and intraorganismal copy number dynamics of retrotransposons and tandem repeat in Aegilops speltoides Tausch (Poaceae, Triticeae).

Authors:  Imad Shams; Olga Raskina
Journal:  Protoplasma       Date:  2018-01-27       Impact factor: 3.356

4.  Genomic diversity of Ac-like transposable elements in sphaerococcum mutant forms of common wheat (Triticum aestivum L.) and triticale (X Triticosecale Witt.).

Authors:  Georgi Bonchev; Lubomir Stoilov; Zorniza Angelova; Sevdalin Georgiev
Journal:  J Appl Genet       Date:  2011-10-05       Impact factor: 3.240

5.  An integrated cytogenetic and physical map reveals unevenly distributed recombination spots along the papaya sex chromosomes.

Authors:  Ching Man Wai; Paul H Moore; Robert E Paull; Ray Ming; Qingyi Yu
Journal:  Chromosome Res       Date:  2012-09-25       Impact factor: 5.239

6.  Retroelement insertional polymorphisms, diversity and phylogeography within diploid, D-genome Aegilops tauschii (Triticeae, Poaceae) sub-taxa in Iran.

Authors:  Hojjatollah Saeidi; Mohammad Reza Rahiminejad; J S Heslop-Harrison
Journal:  Ann Bot       Date:  2008-04       Impact factor: 4.357

7.  Field cress genome mapping: Integrating linkage and comparative maps with cytogenetic analysis for rDNA carrying chromosomes.

Authors:  Zeratsion Abera Desta; Bozena Kolano; Zeeshan Shamim; Susan J Armstrong; Monika Rewers; Elwira Sliwinska; Sandeep Kumar Kushwaha; Isobel A P Parkin; Rodomiro Ortiz; Dirk-Jan de Koning
Journal:  Sci Rep       Date:  2019-11-19       Impact factor: 4.379

  7 in total

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