Literature DB >> 16616996

EST-based identification of genes expressed in the liver of adult seabass (Dicentrarchus labrax, L.).

Valentina Chini1, Simona Rimoldi, Genciana Terova, Marco Saroglia, Federica Rossi, Giovanni Bernardini, Rosalba Gornati.   

Abstract

The scarcity of the genomic resources for some fish species, in spite of their commercial interest, could retard the positive effects that modern biotechnology can offer to aquaculture industry. Then an effort should be made to reduce, as far as it concerns genomic resources, the gap that separates farming species from "model organisms". In this paper, we present an EST project in which we performed single pass sequencing on 1229 randomly selected clones from a sea bass cDNA library. The sequences are deposited in the NCBI database with the following accession numbers: from , from , from and from . EST cataloguing and profiling of seabass will set the basis for functional genomic research in this species, but will also serve for comparative and environmental genomics, for the identification of polymorphic markers useful, for example, to survey the disease resistance of fish, for the discovery of new molecular markers of exposure and for the production of micro- and macro-arrays.

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Year:  2006        PMID: 16616996     DOI: 10.1016/j.gene.2006.02.010

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  8 in total

1.  Transcriptomic characterization of the larval stage in gilthead seabream (Sparus aurata) by 454 pyrosequencing.

Authors:  Manuel Yúfera; Silke Halm; Sergi Beltran; Berta Fusté; Josep V Planas; Gonzalo Martínez-Rodríguez
Journal:  Mar Biotechnol (NY)       Date:  2011-12-14       Impact factor: 3.619

2.  EST-based identification of genes expressed in perch (Perca fluviatilis, L.).

Authors:  Federica Rossi; Valentina Chini; Anna Giulia Cattaneo; Giovanni Bernardini; Genciana Terova; Marco Saroglia; Rosalba Gornati
Journal:  Gene Expr       Date:  2007

3.  Transcriptome analysis of head kidney in grass carp and discovery of immune-related genes.

Authors:  Jin Chen; Cai Li; Rong Huang; Fukuan Du; Lanjie Liao; Zuoyan Zhu; Yaping Wang
Journal:  BMC Vet Res       Date:  2012-07-09       Impact factor: 2.741

4.  Genomic resources for a commercial flatfish, the Senegalese sole (Solea senegalensis): EST sequencing, oligo microarray design, and development of the Soleamold bioinformatic platform.

Authors:  Joan Cerdà; Jaume Mercadé; Juan José Lozano; Manuel Manchado; Angèle Tingaud-Sequeira; Antonio Astola; Carlos Infante; Silke Halm; Jordi Viñas; Barbara Castellana; Esther Asensio; Pedro Cañavate; Gonzalo Martínez-Rodríguez; Francesc Piferrer; Josep V Planas; Francesc Prat; Manuel Yúfera; Olga Durany; Francesc Subirada; Elisabet Rosell; Tamara Maes
Journal:  BMC Genomics       Date:  2008-10-30       Impact factor: 3.969

5.  Profiling of infection specific mRNA transcripts of the European seabass Dicentrarchus labrax.

Authors:  Elena Sarropoulou; Pilar Sepulcre; Laura Poisa-Beiro; Victoriano Mulero; José Meseguer; Antonio Figueras; Beatriz Novoa; Vasso Terzoglou; Richard Reinhardt; Antonios Magoulas; Georgios Kotoulas
Journal:  BMC Genomics       Date:  2009-04-10       Impact factor: 3.969

6.  Comprehensive EST analysis of Atlantic halibut (Hippoglossus hippoglossus), a commercially relevant aquaculture species.

Authors:  Susan E Douglas; Leah C Knickle; Jennifer Kimball; Michael E Reith
Journal:  BMC Genomics       Date:  2007-06-04       Impact factor: 3.969

7.  Towards the ictalurid catfish transcriptome: generation and analysis of 31,215 catfish ESTs.

Authors:  Ping Li; Eric Peatman; Shaolin Wang; Jinian Feng; Chongbo He; Puttharat Baoprasertkul; Peng Xu; Huseyin Kucuktas; Samiran Nandi; Benjaporn Somridhivej; Jerry Serapion; Micah Simmons; Cemal Turan; Lei Liu; William Muir; Rex Dunham; Yolanda Brady; John Grizzle; Zhanjiang Liu
Journal:  BMC Genomics       Date:  2007-06-18       Impact factor: 3.969

8.  GeneHub-GEPIS: digital expression profiling for normal and cancer tissues based on an integrated gene database.

Authors:  Yan Zhang; Shiuh-Ming Luoh; Lawrence S Hon; Robert Baertsch; William I Wood; Zemin Zhang
Journal:  Nucleic Acids Res       Date:  2007-06-01       Impact factor: 16.971

  8 in total

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