Literature DB >> 16616264

Alanine racemase of alfalfa seedlings (Medicago sativa L.): first evidence for the presence of an amino acid racemase in plants.

Kazutoshi Ono1, Kazuki Yanagida, Tadao Oikawa, Tadashi Ogawa, Kenji Soda.   

Abstract

We demonstrated several kinds of D-amino acids in plant seedlings, and moreover alanine racemase (E.C.5.1.1.1) in alfalfa (Medicago sativa L.) seedlings. This is the first evidence for the presence of amino acid racemase in plant. The enzyme was effectively induced by the addition of L- or D-alanine, and we highly purified the enzyme to show enzymological properties. The enzyme exclusively catalyzed racemization of L- and D-alanine. The K(m) and V(max) values of enzyme for L-alanine were 29.6 x 10(-3) M and 1.02 mol/s/kg, and those for D-alanine are 12.0 x 10(-3) M and 0.44 mol/s/kg, respectively. The K(eq) value was estimated to be about 1 and indicated that the enzyme catalyzes a typical racemization of both enantiomers of alanine. The enzyme was inactivated by hydroxylamine, phenylhydrazine and some other pyridoxal 5'-phosphate enzyme inhibitors. Accordingly, the enzyme required pyridoxal 5'-phosphate as a coenzyme, and enzymologically resembled bacterial alanine racemases studied so far.

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Year:  2006        PMID: 16616264     DOI: 10.1016/j.phytochem.2006.02.017

Source DB:  PubMed          Journal:  Phytochemistry        ISSN: 0031-9422            Impact factor:   4.072


  9 in total

1.  Discovery of a novel amino acid racemase through exploration of natural variation in Arabidopsis thaliana.

Authors:  Renee C Strauch; Elisabeth Svedin; Brian Dilkes; Clint Chapple; Xu Li
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-31       Impact factor: 11.205

2.  Crystallization and preliminary X-ray study of alkaline alanine racemase from Bacillus pseudofirmus OF4.

Authors:  Jiansong Ju; Jianxun Qi; Shujing Xu; Kouhei Ohnishi; Michael J Benedik; Yanfen Xue; Yanhe Ma
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-01-31

3.  Acquisition and assimilation of nitrogen as peptide-bound and D-enantiomers of amino acids by wheat.

Authors:  Paul W Hill; Richard S Quilliam; Thomas H DeLuca; John Farrar; Mark Farrell; Paula Roberts; Kevin K Newsham; David W Hopkins; Richard D Bardgett; David L Jones
Journal:  PLoS One       Date:  2011-04-26       Impact factor: 3.240

4.  Analyses of Arabidopsis ecotypes reveal metabolic diversity to convert D-amino acids.

Authors:  Dirk Gördes; Grit Koch; Kerstin Thurow; Uner Kolukisaoglu
Journal:  Springerplus       Date:  2013-10-24

Review 5.  New Insights Into the Mechanisms and Biological Roles of D-Amino Acids in Complex Eco-Systems.

Authors:  Alena Aliashkevich; Laura Alvarez; Felipe Cava
Journal:  Front Microbiol       Date:  2018-04-06       Impact factor: 5.640

6.  Crystal structures of lysine-preferred racemases, the non-antibiotic selectable markers for transgenic plants.

Authors:  Hsin-Mao Wu; Yi-Chia Kuan; Chia-Han Chu; Wen-Hwei Hsu; Wen-Ching Wang
Journal:  PLoS One       Date:  2012-10-31       Impact factor: 3.240

7.  Crystal Structure of a Thermostable Alanine Racemase from Thermoanaerobacter tengcongensis MB4 Reveals the Role of Gln360 in Substrate Selection.

Authors:  Xiaoliang Sun; Guangzheng He; Xiaoyan Wang; Shujing Xu; Jiansong Ju; Xiaoling Xu
Journal:  PLoS One       Date:  2015-07-28       Impact factor: 3.240

8.  d-Amino Acids Are Exuded by Arabidopsis thaliana Roots to the Rhizosphere.

Authors:  Claudia Hener; Sabine Hummel; Juan Suarez; Mark Stahl; Üner Kolukisaoglu
Journal:  Int J Mol Sci       Date:  2018-04-07       Impact factor: 5.923

Review 9.  D-amino Acids in Plants: Sources, Metabolism, and Functions.

Authors:  Üner Kolukisaoglu
Journal:  Int J Mol Sci       Date:  2020-07-30       Impact factor: 5.923

  9 in total

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