Literature DB >> 16615919

Phasing macromolecular structures with UV-induced structural changes.

Max H Nanao1, Raimond B G Ravelli.   

Abstract

Experimental phasing of macromolecular crystal structures relies on the accurate measurement of two or more sets of reflections from isomorphous crystals, where the scattering power of a few atoms is different for each set. Recently, it was demonstrated that X-ray-induced intensity differences can also contain phasing information, exploiting specific structural changes characteristic of X-ray damage. This method (radiation damage-induced phasing; RIP) has the advantage that it can be performed on a single crystal of the native macromolecule. However, a drawback is that X-rays introduce many small changes to both solvent and macromolecule. In this study, ultraviolet (UV) radiation has been used to induce specific changes in the macromolecule alone, leading to a larger contrast between radiation-susceptible and nonsusceptible sites. Unlike X-ray RIP, UV RIP does not require the use of a synchrotron. The method has been demonstrated for a series of macromolecules.

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Year:  2006        PMID: 16615919     DOI: 10.1016/j.str.2006.02.007

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  20 in total

Review 1.  Synergy within structural biology of single crystal optical spectroscopy and X-ray crystallography.

Authors:  Teresa De la Mora-Rey; Carrie M Wilmot
Journal:  Curr Opin Struct Biol       Date:  2007-10-23       Impact factor: 6.809

2.  Identification of patterns in diffraction intensities affected by radiation exposure.

Authors:  Dominika Borek; Zbigniew Dauter; Zbyszek Otwinowski
Journal:  J Synchrotron Radiat       Date:  2012-12-06       Impact factor: 2.616

3.  Towards protein-crystal centering using second-harmonic generation (SHG) microscopy.

Authors:  David J Kissick; Christopher M Dettmar; Michael Becker; Anne M Mulichak; Vadim Cherezov; Stephan L Ginell; Kevin P Battaile; Lisa J Keefe; Robert F Fischetti; Garth J Simpson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-04-19

Review 4.  Second-order nonlinear optical imaging of chiral crystals.

Authors:  David J Kissick; Debbie Wanapun; Garth J Simpson
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2011       Impact factor: 10.745

5.  'Broken symmetries' in macromolecular crystallography: phasing from unmerged data.

Authors:  Marc Schiltz; Gérard Bricogne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

6.  Radiation damage in macromolecular crystallography: what is it and why should we care?

Authors:  Elspeth F Garman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

7.  Experimental Phasing of MicroED Data Using Radiation Damage.

Authors:  Michael W Martynowycz; Johan Hattne; Tamir Gonen
Journal:  Structure       Date:  2020-02-04       Impact factor: 5.006

8.  Facilities for macromolecular crystallography at the Helmholtz-Zentrum Berlin.

Authors:  Uwe Mueller; Nora Darowski; Martin R Fuchs; Ronald Förster; Michael Hellmig; Karthik S Paithankar; Sandra Pühringer; Michael Steffien; Georg Zocher; Manfred S Weiss
Journal:  J Synchrotron Radiat       Date:  2012-03-20       Impact factor: 2.616

9.  Macromolecular crystallography radiation damage research: what's new?

Authors:  Elspeth F Garman; Martin Weik
Journal:  J Synchrotron Radiat       Date:  2011-04-27       Impact factor: 2.616

10.  Integrated nonlinear optical imaging microscope for on-axis crystal detection and centering at a synchrotron beamline.

Authors:  Jeremy T Madden; Scott J Toth; Christopher M Dettmar; Justin A Newman; Robert A Oglesbee; Hartmut G Hedderich; R Michael Everly; Michael Becker; Judith A Ronau; Susan K Buchanan; Vadim Cherezov; Marie E Morrow; Shenglan Xu; Dale Ferguson; Oleg Makarov; Chittaranjan Das; Robert Fischetti; Garth J Simpson
Journal:  J Synchrotron Radiat       Date:  2013-05-03       Impact factor: 2.616

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