Literature DB >> 16606226

Coupling hydrophobicity, dispersion, and electrostatics in continuum solvent models.

J Dzubiella1, J M J Swanson, J A McCammon.   

Abstract

An implicit solvent model is presented that couples hydrophobic, dispersion, and electrostatic solvation energies by minimizing the system Gibbs free energy with respect to the solvent volume exclusion function. The solvent accessible surface is the output of the theory. The method is illustrated with the solvation of simple solutes on different length scales and captures the sensitivity of hydration to the particular form of the solute-solvent interactions in agreement with recent computer simulations.

Mesh:

Substances:

Year:  2006        PMID: 16606226     DOI: 10.1103/PhysRevLett.96.087802

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  69 in total

1.  Differential geometry based solvation model II: Lagrangian formulation.

Authors:  Zhan Chen; Nathan A Baker; G W Wei
Journal:  J Math Biol       Date:  2011-01-30       Impact factor: 2.259

2.  Level-Set Minimization of Potential Controlled Hadwiger Valuations for Molecular Solvation.

Authors:  Li-Tien Cheng; Bo Li; Zhongming Wang
Journal:  J Comput Phys       Date:  2010-11-01       Impact factor: 3.553

3.  Energy variational analysis of ions in water and channels: Field theory for primitive models of complex ionic fluids.

Authors:  Bob Eisenberg; Yunkyong Hyon; Chun Liu
Journal:  J Chem Phys       Date:  2010-09-14       Impact factor: 3.488

4.  A self-consistent phase-field approach to implicit solvation of charged molecules with Poisson-Boltzmann electrostatics.

Authors:  Hui Sun; Jiayi Wen; Yanxiang Zhao; Bo Li; J Andrew McCammon
Journal:  J Chem Phys       Date:  2015-12-28       Impact factor: 3.488

Review 5.  Force fields for simulating the interaction of surfaces with biological molecules.

Authors:  Lewis Martin; Marcela M Bilek; Anthony S Weiss; Serdar Kuyucak
Journal:  Interface Focus       Date:  2016-02-06       Impact factor: 3.906

6.  Parameter optimization in differential geometry based solvation models.

Authors:  Bao Wang; G W Wei
Journal:  J Chem Phys       Date:  2015-10-07       Impact factor: 3.488

Review 7.  Recent advances in implicit solvent-based methods for biomolecular simulations.

Authors:  Jianhan Chen; Charles L Brooks; Jana Khandogin
Journal:  Curr Opin Struct Biol       Date:  2008-03-04       Impact factor: 6.809

8.  Critical importance of length-scale dependence in implicit modeling of hydrophobic interactions.

Authors:  Jianhan Chen; Charles L Brooks
Journal:  J Am Chem Soc       Date:  2007-02-09       Impact factor: 15.419

Review 9.  Dewetting and hydrophobic interaction in physical and biological systems.

Authors:  Bruce J Berne; John D Weeks; Ruhong Zhou
Journal:  Annu Rev Phys Chem       Date:  2009       Impact factor: 12.703

10.  LS-VISM: A software package for analysis of biomolecular solvation.

Authors:  Shenggao Zhou; Li-Tien Cheng; Hui Sun; Jianwei Che; Joachim Dzubiella; Bo Li; J Andrew McCammon
Journal:  J Comput Chem       Date:  2015-03-12       Impact factor: 3.376

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.