Literature DB >> 16604105

New evidence from Sinapis alba L. for ancestral triplication in a crucifer genome.

Matthew N Nelson1, Derek J Lydiate.   

Abstract

We present clear evidence of ancestral genome triplication in Sinapis alba, a close relative of the cultivated Brassica species. Exceptionally high levels of heterozygosity in the parents of an F1 intercross permitted the mapping of an estimated 87% of all detected restriction fragment length polymorphism (RFLP) loci, with each RFLP probe typically detecting 2 or 3 loci. These duplicated loci were arranged in 8 triplicated homologous linkage blocks and 2 small, duplicated, homologous linkage blocks covering the majority of the S. alba genome. Several large-scale inversions and translocations appear to have rearranged the order of loci within homologous blocks. The role of successive polyploidization events on the evolution of crucifer species is discussed.

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Year:  2006        PMID: 16604105     DOI: 10.1139/g05-099

Source DB:  PubMed          Journal:  Genome        ISSN: 0831-2796            Impact factor:   2.166


  8 in total

1.  Characterization of terminal-repeat retrotransposon in miniature (TRIM) in Brassica relatives.

Authors:  Tae-Jin Yang; Soo-Jin Kwon; Beom-Soon Choi; Jung Sun Kim; Mina Jin; Ki-Byung Lim; Jee Young Park; Jin-A Kim; Myung-Ho Lim; Ho-Il Kim; Hyo-Jin Lee; Yong Pyo Lim; Andrew H Paterson; Beom-Seok Park
Journal:  Theor Appl Genet       Date:  2006-12-09       Impact factor: 5.699

2.  The first gene-based map of Lupinus angustifolius L.-location of domestication genes and conserved synteny with Medicago truncatula.

Authors:  Matthew N Nelson; Huyen T T Phan; Simon R Ellwood; Paula M Moolhuijzen; James Hane; Angela Williams; Clare E O'Lone; John Fosu-Nyarko; Marie Scobie; Mehmet Cakir; Michael G K Jones; Matthew Bellgard; Michał Ksiazkiewicz; Bogdan Wolko; Susan J Barker; Richard P Oliver; Wallace A Cowling
Journal:  Theor Appl Genet       Date:  2006-05-11       Impact factor: 5.699

3.  Aligning a new reference genetic map of Lupinus angustifolius with the genome sequence of the model legume, Lotus japonicus.

Authors:  Matthew N Nelson; Paula M Moolhuijzen; Jeffrey G Boersma; Magdalena Chudy; Karolina Lesniewska; Matthew Bellgard; Richard P Oliver; Wojciech Swiecicki; Bogdan Wolko; Wallace A Cowling; Simon R Ellwood
Journal:  DNA Res       Date:  2010-02-04       Impact factor: 4.458

4.  Ancestral chromosomal blocks are triplicated in Brassiceae species with varying chromosome number and genome size.

Authors:  Martin A Lysak; Kwok Cheung; Michaela Kitschke; Petr Bures
Journal:  Plant Physiol       Date:  2007-08-24       Impact factor: 8.340

5.  Construction of a genetic linkage map and QTL analysis of erucic acid content and glucosinolate components in yellow mustard (Sinapis alba L.).

Authors:  Farzad Javidfar; Bifang Cheng
Journal:  BMC Plant Biol       Date:  2013-09-26       Impact factor: 4.215

6.  RNA-seq based SNPs for mapping in Brassica juncea (AABB): synteny analysis between the two constituent genomes A (from B. rapa) and B (from B. nigra) shows highly divergent gene block arrangement and unique block fragmentation patterns.

Authors:  Kumar Paritosh; Vibha Gupta; Satish K Yadava; Priyansha Singh; Akshay K Pradhan; Deepak Pental
Journal:  BMC Genomics       Date:  2014-05-23       Impact factor: 3.969

7.  Detection and molecular characterization of two FAD3 genes controlling linolenic acid content and development of allele-specific markers in yellow mustard (Sinapis alba).

Authors:  Entang Tian; Fangqin Zeng; Kimberly MacKay; Vicky Roslinsky; Bifang Cheng
Journal:  PLoS One       Date:  2014-05-13       Impact factor: 3.240

8.  Exploring the basis of 2-propenyl and 3-butenyl glucosinolate synthesis by QTL mapping and RNA-sequencing in Brassica juncea.

Authors:  Aimal Nawaz Khattak; Tianya Wang; Kunjiang Yu; Renqin Yang; Wei Wan; Botao Ye; Entang Tian
Journal:  PLoS One       Date:  2019-10-18       Impact factor: 3.240

  8 in total

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