Literature DB >> 16603504

A statistical-mechanical theory of fibril formation in dilute protein solutions.

Jeroen van Gestel1, Simon W de Leeuw.   

Abstract

We outline a theoretical treatment that describes fibril formation in dilute protein solutions. For this, we combine a theory describing self-assembly and conformational transition with a description of the lateral association of linear chains. Our statistical-mechanical model is able to predict the mean degree of polymerization and the length of the fibrils and their precursors, as well as the weight fractions of the different aggregated species in solution. We find that there appear to exist two regimes as a function of concentration, and as a function of the free energies of protein association: one in which low-molecular weight compounds dominate and one in which the fibrils do. The transition between these regimes can be quite sharp, and becomes sharper as more filaments are allowed to associate into a single fibril. The fraction of fibrils consisting of less than the maximum allowed number of filaments turns out to be negligible, in agreement with experimental studies, where the fibril thickness is found to be practically monodisperse. In addition, we find that the description of the fibril ends has a large effect on the predicted fibril length.

Mesh:

Substances:

Year:  2006        PMID: 16603504      PMCID: PMC1432121          DOI: 10.1529/biophysj.105.076000

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  32 in total

1.  Amyloid beta-protein fibrillogenesis. Structure and biological activity of protofibrillar intermediates.

Authors:  D M Walsh; D M Hartley; Y Kusumoto; Y Fezoui; M M Condron; A Lomakin; G B Benedek; D J Selkoe; D B Teplow
Journal:  J Biol Chem       Date:  1999-09-03       Impact factor: 5.157

2.  Assembly of A beta amyloid protofibrils: an in vitro model for a possible early event in Alzheimer's disease.

Authors:  J D Harper; S S Wong; C M Lieber; P T Lansbury
Journal:  Biochemistry       Date:  1999-07-13       Impact factor: 3.162

3.  Formation of amyloid fibrils from fully reduced hen egg white lysozyme.

Authors:  Aoneng Cao; Daoying Hu; Luhua Lai
Journal:  Protein Sci       Date:  2004-01-10       Impact factor: 6.725

4.  Molecular dynamics simulations of spontaneous fibril formation by random-coil peptides.

Authors:  Hung D Nguyen; Carol K Hall
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-08       Impact factor: 11.205

5.  Insights into microtubule nucleation from the crystal structure of human gamma-tubulin.

Authors:  Hector Aldaz; Luke M Rice; Tim Stearns; David A Agard
Journal:  Nature       Date:  2005-05-26       Impact factor: 49.962

6.  Structural insights into a yeast prion illuminate nucleation and strain diversity.

Authors:  Rajaraman Krishnan; Susan L Lindquist
Journal:  Nature       Date:  2005-06-09       Impact factor: 49.962

7.  A theory of linear and helical aggregations of macromolecules.

Authors:  F OOSAWA; M KASAI
Journal:  J Mol Biol       Date:  1962-01       Impact factor: 5.469

8.  A nucleated assembly mechanism of Alzheimer paired helical filaments.

Authors:  P Friedhoff; M von Bergen; E M Mandelkow; P Davies; E Mandelkow
Journal:  Proc Natl Acad Sci U S A       Date:  1998-12-22       Impact factor: 11.205

9.  Amyloid beta-protein fibrillogenesis. Detection of a protofibrillar intermediate.

Authors:  D M Walsh; A Lomakin; G B Benedek; M M Condron; D B Teplow
Journal:  J Biol Chem       Date:  1997-08-29       Impact factor: 5.157

10.  On the nucleation and growth of amyloid beta-protein fibrils: detection of nuclei and quantitation of rate constants.

Authors:  A Lomakin; D S Chung; G B Benedek; D A Kirschner; D B Teplow
Journal:  Proc Natl Acad Sci U S A       Date:  1996-02-06       Impact factor: 11.205

View more
  11 in total

1.  Dissecting the kinetic process of amyloid fiber formation through asymptotic analysis.

Authors:  Liu Hong; Xianghong Qi; Yang Zhang
Journal:  J Phys Chem B       Date:  2011-12-13       Impact factor: 2.991

2.  Amyloid β-protein aggregation produces highly reproducible kinetic data and occurs by a two-phase process.

Authors:  Erik Hellstrand; Barry Boland; Dominic M Walsh; Sara Linse
Journal:  ACS Chem Neurosci       Date:  2009-10-09       Impact factor: 4.418

3.  The formation of fibrils by intertwining of filaments: model and application to amyloid Abeta protein.

Authors:  Jeroen van Gestel; Simon W de Leeuw
Journal:  Biophys J       Date:  2006-11-17       Impact factor: 4.033

4.  Concentration dependence of alpha-synuclein fibril length assessed by quantitative atomic force microscopy and statistical-mechanical theory.

Authors:  Martijn E van Raaij; Jeroen van Gestel; Ine M J Segers-Nolten; Simon W de Leeuw; Vinod Subramaniam
Journal:  Biophys J       Date:  2008-08-01       Impact factor: 4.033

5.  What drives amyloid molecules to assemble into oligomers and fibrils?

Authors:  Jeremy D Schmit; Kingshuk Ghosh; Ken Dill
Journal:  Biophys J       Date:  2011-01-19       Impact factor: 4.033

6.  Evolution of protein interfaces in multimers and fibrils.

Authors:  W Jeffrey Zabel; Kyle P Hagner; Benjamin J Livesey; Joseph A Marsh; Sima Setayeshgar; Michael Lynch; Paul G Higgs
Journal:  J Chem Phys       Date:  2019-06-14       Impact factor: 3.488

7.  Triggering of inflammasome by aggregated α-synuclein, an inflammatory response in synucleinopathies.

Authors:  Gaia Codolo; Nicoletta Plotegher; Tommaso Pozzobon; Marco Brucale; Isabella Tessari; Luigi Bubacco; Marina de Bernard
Journal:  PLoS One       Date:  2013-01-31       Impact factor: 3.240

Review 8.  Statistical mechanical treatments of protein amyloid formation.

Authors:  John S Schreck; Jian-Min Yuan
Journal:  Int J Mol Sci       Date:  2013-08-23       Impact factor: 5.923

9.  Leucine-rich repeat kinase 2 positively regulates inflammation and down-regulates NF-κB p50 signaling in cultured microglia cells.

Authors:  Isabella Russo; Giulia Berti; Nicoletta Plotegher; Greta Bernardo; Roberta Filograna; Luigi Bubacco; Elisa Greggio
Journal:  J Neuroinflammation       Date:  2015-12-09       Impact factor: 8.322

10.  Assembly Mechanism for Aggregation of Amyloid Fibrils.

Authors:  Lingyun Zhang
Journal:  Int J Mol Sci       Date:  2018-07-23       Impact factor: 5.923

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.