Literature DB >> 16602976

Interpretation of pulsed-field gel electrophoresis patterns in foodborne disease investigations and surveillance.

Timothy J Barrett1, Peter Gerner-Smidt, Bala Swaminathan.   

Abstract

Since the establishment of the well-known Tenover criteria in 1995 (Tenover et al., 1995), relatively few papers have been published about the interpretation of subtyping data generated by pulsed-field gel electrophoresis (PFGE). This paper describes the approach that has been used in the PulseNet network during the past 10 years. PFGE data must always be interpreted in the proper epidemiological context and PFGE data can not alone prove an epidemiological connection. The Tenover criteria are not generally applicable to the interpretation of PFGE subtyping data of foodborne pathogens. The reproducibility of the method with a particular organism, the quality of the PFGE gel, the variability of the organism being subtyped, and the prevalence of the pattern in question must always be considered. Only isolates displaying indistinguishable patterns should be included in the detection of clusters of infections or the initial case definition in a point-source outbreak. More variability (patterns differing from each other in two to three band positions) may be accepted if the outbreak has been going on for some time or if person-person spread is a prominent feature. If epidemiological information is sufficiently strong, isolates with markedly different PFGE patterns may be included in an outbreak.

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Year:  2006        PMID: 16602976     DOI: 10.1089/fpd.2006.3.20

Source DB:  PubMed          Journal:  Foodborne Pathog Dis        ISSN: 1535-3141            Impact factor:   3.171


  44 in total

1.  Rapid screening of epidemiologically important Salmonella enterica subsp. enterica serovars by whole-cell matrix-assisted laser desorption ionization-time of flight mass spectrometry.

Authors:  Ralf Dieckmann; Burkhard Malorny
Journal:  Appl Environ Microbiol       Date:  2011-04-22       Impact factor: 4.792

2.  Comparative study of all Salmonella enterica serovar Enteritidis strains isolated from food and food animals in Greece from 2008 to 2010 with clinical isolates.

Authors:  T Papadopoulos; E Petridou; A Zdragas; G Mandilara; S Nair; T Peters; M Chattaway; E de Pinna; M Passiotou; A Vatopoulos
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2016-02-10       Impact factor: 3.267

3.  Tracing shigatoxigenic Escherichia coli O103, O145, and O174 infections from farm residents to cattle.

Authors:  Sirpa Heinikainen; Tarja Pohjanvirta; Marjut Eklund; Anja Siitonen; Sinikka Pelkonen
Journal:  J Clin Microbiol       Date:  2007-09-05       Impact factor: 5.948

4.  Potential nosocomial acquisition of epidemic Listeria monocytogenes presenting as multiple brain abscesses resembling nocardiosis.

Authors:  Aleksandra Stefanovic; James Reid; A Celine Nadon; Jennifer Grant
Journal:  Can J Infect Dis Med Microbiol       Date:  2010       Impact factor: 2.471

5.  Multi-virulence-locus sequence typing identifies single nucleotide polymorphisms which differentiate epidemic clones and outbreak strains of Listeria monocytogenes.

Authors:  Yi Chen; Wei Zhang; Stephen J Knabel
Journal:  J Clin Microbiol       Date:  2007-01-10       Impact factor: 5.948

Review 6.  Navigating Microbiological Food Safety in the Era of Whole-Genome Sequencing.

Authors:  J Ronholm; Neda Nasheri; Nicholas Petronella; Franco Pagotto
Journal:  Clin Microbiol Rev       Date:  2016-10       Impact factor: 26.132

7.  Pulsotype Diversity of Clostridium botulinum Strains Containing Serotypes A and/or B Genes.

Authors:  Jessica L Halpin; Lavin Joseph; Janet K Dykes; Loretta McCroskey; Elise Smith; Denise Toney; Steven Stroika; Kelley Hise; Susan Maslanka; Carolina Lúquez
Journal:  Foodborne Pathog Dis       Date:  2017-07-10       Impact factor: 3.171

8.  Epidemiology of European community-associated methicillin-resistant Staphylococcus aureus clonal complex 80 type IV strains isolated in Denmark from 1993 to 2004.

Authors:  A R Larsen; S Böcher; M Stegger; R Goering; L V Pallesen; R Skov
Journal:  J Clin Microbiol       Date:  2007-11-07       Impact factor: 5.948

9.  Intestinal carriage of multidrug-resistant gram-negative bacteria in preterm-infants during hospitalization in neonatal intensive care unit (NICU).

Authors:  Polly Soo Xi Yap; Azanna Ahmad Kamar; Chun Wie Chong; Ivan Kok Seng Yap; Kwai Lin Thong; Yao Mun Choo; Mohd Yasim Md Yusof; Cindy Shuan Ju Teh
Journal:  Pathog Glob Health       Date:  2016-09-21       Impact factor: 2.894

10.  Phylogenetic classification of Escherichia coli O157:H7 strains of human and bovine origin using a novel set of nucleotide polymorphisms.

Authors:  Michael L Clawson; James E Keen; Timothy P L Smith; Lisa M Durso; Tara G McDaneld; Robert E Mandrell; Margaret A Davis; James L Bono
Journal:  Genome Biol       Date:  2009-05-22       Impact factor: 13.583

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