Literature DB >> 16599534

Gaseous bradykinin and its singly, doubly, and triply protonated forms: a first-principles study.

Christopher F Rodriquez1, Galina Orlova, Yuzhu Guo, Xiaomao Li, Chi-Kit Siu, Alan C Hopkinson, K W Michael Siu.   

Abstract

The conformers of gaseous bradykinin, BK, (Arg(1)-Pro(2)-Pro(3)-Gly(4)-Phe(5)-Ser(6)-Pro(7)-Phe(8)-Arg(9)) and its protonated forms, [BK + H](+), [BK + 2H](2+), and [BK + 3H](3+), were examined theoretically using a combination of the Merck molecular force field, Hartree-Fock, and density functional theory. Neutral BK, [BK + H](+), and [BK + 2H](2+) exist in zwitterionic forms that are stabilized by internal solvation and have compact structures; [BK + 3H](3+) differs by the absence of a salt bridge and adopts an elongated form. The common structural feature in all four BK species is a beta-turn in the Ser(6)-Pro(7)-Phe(8)-Arg(9) sequence. The gas-phase basicity of [BK + H](+) estimated from the calculated protonation energy is in accord with published experimental basicity; population-weighted collision cross-sections of the three ionic forms are in agreement with experimental cross-sections in the literature.

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Year:  2006        PMID: 16599534     DOI: 10.1021/jp046015r

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  19 in total

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Authors:  Nicholas A Pierson; David E Clemmer
Journal:  Int J Mass Spectrom       Date:  2015-02-01       Impact factor: 1.986

5.  Gas-phase structure and fragmentation pathways of singly protonated peptides with N-terminal arginine.

Authors:  Benjamin J Bythell; István P Csonka; Sándor Suhai; Douglas F Barofsky; Béla Paizs
Journal:  J Phys Chem B       Date:  2010-10-25       Impact factor: 2.991

6.  Statistical analysis of ion mobility spectrometry. II. Adaptively biased methods and shape correlations.

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Journal:  J Am Soc Mass Spectrom       Date:  2012-05-10       Impact factor: 3.109

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Journal:  Anal Chem       Date:  2016-08-12       Impact factor: 6.986

8.  On the zwitterionic nature of gas-phase peptides and protein ions.

Authors:  Roberto Marchese; Rita Grandori; Paolo Carloni; Simone Raugei
Journal:  PLoS Comput Biol       Date:  2010-05-06       Impact factor: 4.475

9.  Differential ion mobility separations of peptides with resolving power exceeding 50.

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Journal:  Anal Chem       Date:  2010-01-01       Impact factor: 6.986

10.  Cis-trans isomerizations of proline residues are key to bradykinin conformations.

Authors:  Nicholas A Pierson; Liuxi Chen; David H Russell; David E Clemmer
Journal:  J Am Chem Soc       Date:  2013-02-13       Impact factor: 15.419

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