Literature DB >> 16599451

Effects of intermolecular vibrational coupling and liquid dynamics on the polarized Raman and two-dimensional infrared spectral profiles of liquid N,N-dimethylformamide analyzed with a time-domain computational method.

Hajime Torii1.   

Abstract

A time-domain method for calculating polarized Raman and two-dimensional infrared (2D-IR) spectra that includes the effects of both the diagonal frequency modulations (of individual molecules in the system) and the off-diagonal (intermolecular) vibrational coupling is presented and applied to the case of the amide I band of liquid N,N-dimethylformamide. It is shown that the effect of the resonant off-diagonal vibrational coupling and the resulting delocalization of vibrational modes is clearly seen as the noncoincidence effect in the polarized Raman spectrum and some spectral features (especially as asymmetric intensity patterns) in the 2D-IR spectra. The type of 2D-IR spectra (concerning the polarization condition) most appropriate for observing this effect is discussed. On the basis of the agreement between the observed and calculated band profiles of the polarized Raman spectrum, the time dependence of the transient IR absorption anisotropy is also calculated. The method of evaluating the extent of delocalization of vibrational modes that is relevant to the features of these optical signals in the time and frequency domains is discussed. The nature of the molecular motions (concerning the liquid dynamics) that are effective on the diagonal frequency modulations is also examined.

Entities:  

Year:  2006        PMID: 16599451     DOI: 10.1021/jp060014c

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  14 in total

Review 1.  Vibrational Spectroscopic Map, Vibrational Spectroscopy, and Intermolecular Interaction.

Authors:  Carlos R Baiz; Bartosz Błasiak; Jens Bredenbeck; Minhaeng Cho; Jun-Ho Choi; Steven A Corcelli; Arend G Dijkstra; Chi-Jui Feng; Sean Garrett-Roe; Nien-Hui Ge; Magnus W D Hanson-Heine; Jonathan D Hirst; Thomas L C Jansen; Kijeong Kwac; Kevin J Kubarych; Casey H Londergan; Hiroaki Maekawa; Mike Reppert; Shinji Saito; Santanu Roy; James L Skinner; Gerhard Stock; John E Straub; Megan C Thielges; Keisuke Tominaga; Andrei Tokmakoff; Hajime Torii; Lu Wang; Lauren J Webb; Martin T Zanni
Journal:  Chem Rev       Date:  2020-06-29       Impact factor: 60.622

2.  Two-dimensional infrared population transfer spectroscopy for enhancing structural markers of proteins.

Authors:  Thomas la Cour Jansen; Jasper Knoester
Journal:  Biophys J       Date:  2007-11-02       Impact factor: 4.033

3.  Coherent infrared multidimensional spectra of the OH stretching band in liquid water simulated by direct nonlinear exciton propagation.

Authors:  Cyril Falvo; Benoit Palmieri; Shaul Mukamel
Journal:  J Chem Phys       Date:  2009-05-14       Impact factor: 3.488

4.  Nonlinear response of vibrational excitons: simulating the two-dimensional infrared spectrum of liquid water.

Authors:  A Paarmann; T Hayashi; S Mukamel; R J D Miller
Journal:  J Chem Phys       Date:  2009-05-28       Impact factor: 3.488

5.  Refining Disordered Peptide Ensembles with Computational Amide I Spectroscopy: Application to Elastin-Like Peptides.

Authors:  Mike Reppert; Anish R Roy; Jeremy O B Tempkin; Aaron R Dinner; Andrei Tokmakoff
Journal:  J Phys Chem B       Date:  2016-10-27       Impact factor: 2.991

6.  Electrostatic frequency shifts in amide I vibrational spectra: direct parameterization against experiment.

Authors:  Mike Reppert; Andrei Tokmakoff
Journal:  J Chem Phys       Date:  2013-04-07       Impact factor: 3.488

7.  Two-dimensional spectroscopy of a molecular dimer unveils the effects of vibronic coupling on exciton coherences.

Authors:  Alexei Halpin; Philip J M Johnson; Roel Tempelaar; R Scott Murphy; Jasper Knoester; Thomas L C Jansen; R J Dwayne Miller
Journal:  Nat Chem       Date:  2014-01-12       Impact factor: 24.427

8.  Refinement of Peptide Conformational Ensembles by 2D IR Spectroscopy: Application to Ala‒Ala‒Ala.

Authors:  Chi-Jui Feng; Balamurugan Dhayalan; Andrei Tokmakoff
Journal:  Biophys J       Date:  2018-06-19       Impact factor: 4.033

9.  The dynamics of peptide-water interactions in dialanine: An ultrafast amide I 2D IR and computational spectroscopy study.

Authors:  Chi-Jui Feng; Andrei Tokmakoff
Journal:  J Chem Phys       Date:  2017-08-28       Impact factor: 3.488

10.  Applications of 2D IR spectroscopy to peptides, proteins, and hydrogen-bond dynamics.

Authors:  Yung Sam Kim; Robin M Hochstrasser
Journal:  J Phys Chem B       Date:  2009-06-18       Impact factor: 2.991

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