Literature DB >> 16598025

Diversity and distribution of Planctomycetes and related bacteria in the suboxic zone of the Black Sea.

John Kirkpatrick1, Brian Oakley, Clara Fuchsman, Sujatha Srinivasan, James T Staley, James W Murray.   

Abstract

Samples from six depths of the Black Sea's suboxic zone were analyzed for 16S rRNA gene sequence information. A gradient in phylotype diversity was found. The distributions of known anaerobic ammonium oxidation (anammox) bacteria, many unknown Planctomycetes, and other phylotypes were examined in relation to the local nutrient and redox conditions.

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Year:  2006        PMID： 16598025      PMCID： PMC1449031          DOI： 10.1128/AEM.72.4.3079-3083.2006

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  27 in total

1.  Missing lithotroph identified as new planctomycete.

Authors:  M Strous; J A Fuerst; E H Kramer; S Logemann; G Muyzer; K T van de Pas-Schoonen; R Webb; J G Kuenen; M S Jetten
Journal:  Nature       Date:  1999-07-29       Impact factor: 49.962

2.  Molecular evidence for genus level diversity of bacteria capable of catalyzing anaerobic ammonium oxidation.

Authors:  M Schmid; U Twachtmann; M Klein; M Strous; S Juretschko; M Jetten; J W Metzger; K H Schleifer; M Wagner
Journal:  Syst Appl Microbiol       Date:  2000-04       Impact factor: 4.022

3.  Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness.

Authors:  Patrick D Schloss; Jo Handelsman
Journal:  Appl Environ Microbiol       Date:  2005-03       Impact factor: 4.792

Review 4.  Intracellular compartmentation in planctomycetes.

Authors:  John A Fuerst
Journal:  Annu Rev Microbiol       Date:  2005       Impact factor: 15.500

5.  Monitoring a widespread bacterial group: in situ detection of planctomycetes with 16S rRNA-targeted probes.

Authors:  Alexander Neef; Rudolf Amann; Heinz Schlesner; Karl-Heinz Schleifer
Journal:  Microbiology (Reading)       Date:  1998-12       Impact factor: 2.777

6.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

Authors:  J D Thompson; T J Gibson; F Plewniak; F Jeanmougin; D G Higgins
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

Review 7.  The planctomycetes: emerging models for microbial ecology, evolution and cell biology.

Authors:  J A Fuerst
Journal:  Microbiology       Date:  1995-07       Impact factor: 2.777

8.  Massive nitrogen loss from the Benguela upwelling system through anaerobic ammonium oxidation.

Authors:  Marcel M M Kuypers; Gaute Lavik; Dagmar Woebken; Markus Schmid; Bernhard M Fuchs; Rudolf Amann; Bo Barker Jørgensen; Mike S M Jetten
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-20       Impact factor: 11.205

9.  Isolation and molecular identification of planctomycete bacteria from postlarvae of the giant tiger prawn, Penaeus monodon.

Authors:  J A Fuerst; H G Gwilliam; M Lindsay; A Lichanska; C Belcher; J E Vickers; P Hugenholtz
Journal:  Appl Environ Microbiol       Date:  1997-01       Impact factor: 4.792

10.  Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation.

Authors:  M A Dojka; P Hugenholtz; S K Haack; N R Pace
Journal:  Appl Environ Microbiol       Date:  1998-10       Impact factor: 4.792
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  19 in total

1.  Anammox bacterial diversity in various aquatic ecosystems based on the detection of hydrazine oxidase genes (hzoA/hzoB).

Authors:  Matthew D Hirsch; Zachery T Long; Bongkeun Song
Journal:  Microb Ecol       Date:  2010-09-14       Impact factor: 4.552

2.  Environmental factors shape sediment anammox bacterial communities in hypernutrified Jiaozhou Bay, China.

Authors:  Hongyue Dang; Ruipeng Chen; Lin Wang; Lizhong Guo; Pingping Chen; Zuwang Tang; Fang Tian; Shaozheng Li; Martin G Klotz
Journal:  Appl Environ Microbiol       Date:  2010-09-10       Impact factor: 4.792

3.  Molecular evidence for the broad distribution of anaerobic ammonium-oxidizing bacteria in freshwater and marine sediments.

Authors:  C Ryan Penton; Allan H Devol; James M Tiedje
Journal:  Appl Environ Microbiol       Date:  2006-10       Impact factor: 4.792

4.  Different Planctomycetes diversity patterns in latitudinal surface seawater of the open sea and in sediment.

Authors:  Qinglong Shu; Nianzhi Jiao
Journal:  J Microbiol       Date:  2008-06-11       Impact factor: 3.422

Review 5.  Beyond the bacterium: planctomycetes challenge our concepts of microbial structure and function.

Authors:  John A Fuerst; Evgeny Sagulenko
Journal:  Nat Rev Microbiol       Date:  2011-06       Impact factor: 60.633

6.  Microbial communities involved in biological ammonium removal from coal combustion wastewaters.

Authors:  Tatiana A Vishnivetskaya; L Suzanne Fisher; Greg A Brodie; Tommy J Phelps
Journal:  Microb Ecol       Date:  2013-01-13       Impact factor: 4.552

7.  Anaerobic ammonium oxidation (anammox) in Chesapeake Bay sediments.

Authors:  Jeremy J Rich; Olivia R Dale; Bongkeun Song; Bess B Ward
Journal:  Microb Ecol       Date:  2007-07-07       Impact factor: 4.552

8.  Planctomycetes in lakes: poor or strong competitors for phosphorus?

Authors:  Thomas Pollet; Jean-François Humbert; Rémy D Tadonléké
Journal:  Appl Environ Microbiol       Date:  2013-11-22       Impact factor: 4.792

9.  Phylogenetic and metabolic diversity of Planctomycetes from anaerobic, sulfide- and sulfur-rich Zodletone Spring, Oklahoma.

Authors:  Mostafa S Elshahed; Noha H Youssef; Qingwei Luo; Fares Z Najar; Bruce A Roe; Tracy M Sisk; Solveig I Bühring; Kai-Uwe Hinrichs; Lee R Krumholz
Journal:  Appl Environ Microbiol       Date:  2007-06-01       Impact factor: 4.792

10.  Concurrent activity of anammox and denitrifying bacteria in the Black Sea.

Authors:  John B Kirkpatrick; Clara A Fuchsman; Evgeniy Yakushev; James T Staley; James W Murray
Journal:  Front Microbiol       Date:  2012-07-19       Impact factor: 5.640
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