Literature DB >> 16597820

Solution structure of the antifreeze-like domain of human sialic acid synthase.

Toshiyuki Hamada1, Yoko Ito, Takamasa Abe, Fumiaki Hayashi, Peter Güntert, Makoto Inoue, Takanori Kigawa, Takaho Terada, Mikako Shirouzu, Mayumi Yoshida, Akiko Tanaka, Sumio Sugano, Shigeyuki Yokoyama, Hiroshi Hirota.   

Abstract

The structure of the C-terminal antifreeze-like (AFL) domain of human sialic acid synthase was determined by NMR spectroscopy. The structure comprises one alpha- and two single-turn 3(10)-helices and two beta-strands, and is similar to those of the type III antifreeze proteins. Evolutionary trace analyses of the type III antifreeze protein family suggested that the class-specific residues in the human and bacterial AFL domains are important for their substrate binding, while the class-specific residues of the fish antifreeze proteins are gathered on the ice-binding surface.

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Year:  2006        PMID: 16597820      PMCID: PMC2242509          DOI: 10.1110/ps.051700406

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  16 in total

1.  Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA.

Authors:  Torsten Herrmann; Peter Güntert; Kurt Wüthrich
Journal:  J Mol Biol       Date:  2002-05-24       Impact factor: 5.469

2.  MOLMOL: a program for display and analysis of macromolecular structures.

Authors:  R Koradi; M Billeter; K Wüthrich
Journal:  J Mol Graph       Date:  1996-02

3.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

Authors:  J D Thompson; T J Gibson; F Plewniak; F Jeanmougin; D G Higgins
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

4.  NMR View: A computer program for the visualization and analysis of NMR data.

Authors:  B A Johnson; R A Blevins
Journal:  J Biomol NMR       Date:  1994-09       Impact factor: 2.835

5.  An evolutionary trace method defines binding surfaces common to protein families.

Authors:  O Lichtarge; H R Bourne; F E Cohen
Journal:  J Mol Biol       Date:  1996-03-29       Impact factor: 5.469

6.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

7.  Sialic acids: fascinating sugars in higher animals and man.

Authors:  Roland Schauer
Journal:  Zoology (Jena)       Date:  2004       Impact factor: 2.240

8.  Structural and mechanistic analysis of sialic acid synthase NeuB from Neisseria meningitidis in complex with Mn2+, phosphoenolpyruvate, and N-acetylmannosaminitol.

Authors:  Jason Gunawan; Dave Simard; Michel Gilbert; Andrew L Lovering; Warren W Wakarchuk; Martin E Tanner; Natalie C J Strynadka
Journal:  J Biol Chem       Date:  2004-10-29       Impact factor: 5.157

9.  The refined crystal structure of an eel pout type III antifreeze protein RD1 at 0.62-A resolution reveals structural microheterogeneity of protein and solvation.

Authors:  Tzu-Ping Ko; Howard Robinson; Yi-Gui Gao; Chi-Hing C Cheng; Arthur L DeVries; Andrew H-J Wang
Journal:  Biophys J       Date:  2003-02       Impact factor: 4.033

10.  Cell-free production and stable-isotope labeling of milligram quantities of proteins.

Authors:  T Kigawa; T Yabuki; Y Yoshida; M Tsutsui; Y Ito; T Shibata; S Yokoyama
Journal:  FEBS Lett       Date:  1999-01-08       Impact factor: 4.124

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  6 in total

1.  Thermodynamic stability of a cold-adapted protein, type III antifreeze protein, and energetic contribution of salt bridges.

Authors:  Olga García-Arribas; Roberto Mateo; Melanie M Tomczak; Peter L Davies; Mauricio G Mateu
Journal:  Protein Sci       Date:  2006-12-22       Impact factor: 6.725

2.  Antifreeze protein dispersion in eelpouts and related fishes reveals migration and climate alteration within the last 20 Ma.

Authors:  Rod S Hobbs; Jennifer R Hall; Laurie A Graham; Peter L Davies; Garth L Fletcher
Journal:  PLoS One       Date:  2020-12-15       Impact factor: 3.240

3.  Comparison of backbone dynamics of the type III antifreeze protein and antifreeze-like domain of human sialic acid synthase.

Authors:  Yong-Geun Choi; Chin-Ju Park; Hee-Eun Kim; Yeo-Jin Seo; Ae-Ree Lee; Seo-Ree Choi; Shim Sung Lee; Joon-Hwa Lee
Journal:  J Biomol NMR       Date:  2015-01-10       Impact factor: 2.835

4.  NANS-mediated synthesis of sialic acid is required for brain and skeletal development.

Authors:  Clara D M van Karnebeek; Luisa Bonafé; Xiao-Yan Wen; Maja Tarailo-Graovac; Sara Balzano; Beryl Royer-Bertrand; Angel Ashikov; Livia Garavelli; Isabella Mammi; Licia Turolla; Catherine Breen; Dian Donnai; Valérie Cormier-Daire; Delphine Heron; Gen Nishimura; Shinichi Uchikawa; Belinda Campos-Xavier; Antonio Rossi; Thierry Hennet; Koroboshka Brand-Arzamendi; Jacob Rozmus; Keith Harshman; Brian J Stevenson; Enrico Girardi; Giulio Superti-Furga; Tammie Dewan; Alissa Collingridge; Jessie Halparin; Colin J Ross; Margot I Van Allen; Andrea Rossi; Udo F Engelke; Leo A J Kluijtmans; Ed van der Heeft; Herma Renkema; Arjan de Brouwer; Karin Huijben; Fokje Zijlstra; Torben Heise; Thomas Boltje; Wyeth W Wasserman; Carlo Rivolta; Sheila Unger; Dirk J Lefeber; Ron A Wevers; Andrea Superti-Furga
Journal:  Nat Genet       Date:  2016-05-23       Impact factor: 38.330

5.  Identification of antifreeze proteins and their functional residues by support vector machine and genetic algorithms based on n-peptide compositions.

Authors:  Chin-Sheng Yu; Chih-Hao Lu
Journal:  PLoS One       Date:  2011-05-31       Impact factor: 3.240

Review 6.  Marine Antifreeze Proteins: Structure, Function, and Application to Cryopreservation as a Potential Cryoprotectant.

Authors:  Hak Jun Kim; Jun Hyuck Lee; Young Baek Hur; Chang Woo Lee; Sun-Ha Park; Bon-Won Koo
Journal:  Mar Drugs       Date:  2017-01-27       Impact factor: 5.118

  6 in total

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