Literature DB >> 16593811

Constitutive and anaerobically induced DNase-I-hypersensitive sites in the 5' region of the maize Adh1 gene.

A L Paul1, V Vasil, I K Vasil, R J Ferl.   

Abstract

DNase-I-hypersensitive sites have been characterized in a plant gene, maize Adh1 (which encodes alcohol dehydrogenase 1). It has been generally recognized in animal genes that the chromatin of the 5' flanking region can be characterized by the accessibility of its DNA to the nuclease DNase I (EC 3.1.21.1), indicating which areas in the promoter are "open" to nuclear factors. The 5' region of the maize Adh1 gene contains two distinct DNase-I-hypersensitive regions, one constitutively present from position -160 to -700 and one that is anaerobically induced from position -35 to -150. The constitutive region contains three major hypersensitive sites, one of which corresponds in part to a region of potential Z-DNA. The induced hypersensitive region includes TATAA at -38 and CAAT at -100 as well as other potential regulatory sequences.

Entities:  

Year:  1987        PMID: 16593811      PMCID: PMC304303          DOI: 10.1073/pnas.84.3.799

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

1.  Simultaneous induction by anaerobiosis or 2,4-D of multiple enzymes specificed by two unlinked genes: differential Adh1-Adh2 expression in maize.

Authors:  M Freeling
Journal:  Mol Gen Genet       Date:  1973-12-31

2.  Temporal order of chromatin structural changes associated with activation of the major chicken vitellogenin gene.

Authors:  J B Burch; H Weintraub
Journal:  Cell       Date:  1983-05       Impact factor: 41.582

Review 3.  Active chromatin.

Authors:  S Weisbrod
Journal:  Nature       Date:  1982-05-27       Impact factor: 49.962

4.  A complex of interacting DNAase I-hypersensitive sites near the Drosophila glue protein gene, Sgs4.

Authors:  A W Shermoen; S K Beckendorf
Journal:  Cell       Date:  1982-06       Impact factor: 41.582

5.  Negatively supercoiled simian virus 40 DNA contains Z-DNA segments within transcriptional enhancer sequences.

Authors:  A Nordheim; A Rich
Journal:  Nature       Date:  1983 Jun 23-29       Impact factor: 49.962

6.  A Drosophila RNA polymerase II transcription factor binds to the regulatory site of an hsp 70 gene.

Authors:  C S Parker; J Topol
Journal:  Cell       Date:  1984-05       Impact factor: 41.582

7.  Interaction of eukaryotic class-B transcription factors and chick progesterone-receptor complex with conalbumin promoter sequences.

Authors:  B L Davison; E R Mulvihill; J M Egly; P Chambon
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1983

8.  cDNA cloning and induction of the alcohol dehydrogenase gene (Adh1) of maize.

Authors:  W L Gerlach; A J Pryor; E S Dennis; R J Ferl; M M Sachs; W J Peacock
Journal:  Proc Natl Acad Sci U S A       Date:  1982-05       Impact factor: 11.205

9.  Molecular analysis of the alcohol dehydrogenase (Adh1) gene of maize.

Authors:  E S Dennis; W L Gerlach; A J Pryor; J L Bennetzen; A Inglis; D Llewellyn; M M Sachs; R J Ferl; W J Peacock
Journal:  Nucleic Acids Res       Date:  1984-05-11       Impact factor: 16.971

10.  Alternative sets of DNase I-hypersensitive sites characterize the various functional states of the chicken lysozyme gene.

Authors:  H P Fritton; T Igo-Kemenes; J Nowock; U Strech-Jurk; M Theisen; A E Sippel
Journal:  Nature       Date:  1984 Sep 13-19       Impact factor: 49.962

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  17 in total

1.  Targeted histone acetylation and altered nuclease accessibility over short regions of the pea plastocyanin gene.

Authors:  Y L Chua; A P Brown; J C Gray
Journal:  Plant Cell       Date:  2001-03       Impact factor: 11.277

2.  Conserved noncoding sequences in the grasses.

Authors:  Dan Choffnes Inada; Ali Bashir; Chunghau Lee; Brian C Thomas; Cynthia Ko; Stephen A Goff; Michael Freeling
Journal:  Genome Res       Date:  2003-09       Impact factor: 9.043

3.  Site-specific oligodeoxynucleotide binding to maize Adh1 gene promoter represses Adh1-GUS gene expression in vivo.

Authors:  G Lu; R J Ferl
Journal:  Plant Mol Biol       Date:  1992-08       Impact factor: 4.076

4.  Constitutive and light-induced DNAseI hypersensitive sites in the rbcS genes of pea (Pisum sativum).

Authors:  A Görz; W Schäfer; E Hirasawa; G Kahl
Journal:  Plant Mol Biol       Date:  1988-09       Impact factor: 4.076

5.  Glutathione-elicited changes in chromatin structure within the promoter of the defense gene chalcone synthase.

Authors:  M A Lawton; S D Clouse; C J Lamb
Journal:  Plant Cell Rep       Date:  1990-01       Impact factor: 4.570

6.  Chromosome topology-organizing genes by loops and bounds

Authors: 
Journal:  Plant Cell       Date:  1998-08       Impact factor: 11.277

7.  Binding of the wheat basic leucine zipper protein EmBP-1 to nucleosomal binding sites is modulated by nucleosome positioning.

Authors:  X Niu; C C Adams; J L Workman; M J Guiltinan
Journal:  Plant Cell       Date:  1996-09       Impact factor: 11.277

8.  Higher order chromatin structures in maize and Arabidopsis.

Authors:  A L Paul; R J Ferl
Journal:  Plant Cell       Date:  1998-08       Impact factor: 11.277

9.  Interaction of a gibberellin-induced factor with the upstream region of an alpha-amylase gene in rice aleurone tissue.

Authors:  T M Ou-Lee; R Turgeon; R Wu
Journal:  Proc Natl Acad Sci U S A       Date:  1988-09       Impact factor: 11.205

10.  Osmium tetroxide footprinting of a scaffold attachment region in the maize Adh1 promoter.

Authors:  A L Paul; R J Ferl
Journal:  Plant Mol Biol       Date:  1993-09       Impact factor: 4.076

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