Literature DB >> 16592212

The Alkali Ion-DNA Interaction as Reflected in the Nuclear Relaxation Rates of Na and Rb.

J Reuben1, M Shporer, E J Gabbay.   

Abstract

Longitudinal relaxation rates of (23)Na and (87)Rb in aqueous solutions of DNA were measured and interpreted in terms of contributions of "bound" and free species. The frequency dependence of the (23)Na relaxation rate sets an upper limit of 5.5 nsec for the correlation time characteristic of the alkali ion-DNA interaction. The plausible description of the alkali ion-DNA interaction emerging from the results is one in which the "bound" ions comprise a highly mobile ionic cloud around the lattice of phosphate groups with a population characterized by an apparent dissociation constant of 10.9 mM. Any specific binding to phosphate groups involving severe restrictions of motional freedom must be much (at least two orders of magnitude) weaker and of a very short duration (<5.5 nsec).

Entities:  

Year:  1975        PMID: 16592212      PMCID: PMC432280          DOI: 10.1073/pnas.72.1.245

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  6 in total

Review 1.  DNA-protein interactions.

Authors:  P H Von Hippel; J D McGhee
Journal:  Annu Rev Biochem       Date:  1972       Impact factor: 23.643

2.  Effects of temperature and field strength on the NMR relaxation times of 23 Na in frog striated muscle.

Authors:  M Shporer; M M Civan
Journal:  Biochim Biophys Acta       Date:  1974-07-04

3.  Sites and thermodynamic quantities associated with proton and metal ion interaction with ribonucleic acid, deoxyribonucleic acid, and their constituent bases, nucleosides, and nucleotides.

Authors:  R M Izatt; J J Christensen; J H Rytting
Journal:  Chem Rev       Date:  1971-10       Impact factor: 60.622

4.  A nuclear magnetic resonance study of 23Na+ complexing by ionophores.

Authors:  D H Haynes; B C Pressman; A Kowalsky
Journal:  Biochemistry       Date:  1971-03-02       Impact factor: 3.162

5.  23Na nuclear magnetic resonance relaxation studies of sodium ion interaction with soluble RNA.

Authors:  T L James; J H Noggle
Journal:  Proc Natl Acad Sci U S A       Date:  1969-03       Impact factor: 11.205

6.  Conformation studies on the sodium and cesium salts of calf thymus deoxyribonucleic acid (DNA).

Authors:  G Cohen; H Eisenberg
Journal:  Biopolymers       Date:  1966 Apr-May       Impact factor: 2.505

  6 in total
  16 in total

1.  Sequence-specific binding of counterions to B-DNA.

Authors:  V P Denisov; B Halle
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-18       Impact factor: 11.205

2.  Pulsed nuclear magnetic resonance study of 39K in frog striated muscle.

Authors:  M M Civan; G G McDonald; M Pring; M Shporer
Journal:  Biophys J       Date:  1976-12       Impact factor: 4.033

3.  Study by (23)Na-NMR, (1)H-NMR, and ultraviolet spectroscopy of the thermal stability of an 11-basepair oligonucleotide.

Authors:  P Cahen; M Luhmer; C Fontaine; C Morat; J Reisse; K Bartik
Journal:  Biophys J       Date:  2000-02       Impact factor: 4.033

4.  Relative binding affinities of monovalent cations for double-stranded DNA.

Authors:  M L Bleam; C F Anderson; M T Record
Journal:  Proc Natl Acad Sci U S A       Date:  1980-06       Impact factor: 11.205

5.  23Na NMR study of the effect of organic osmolytes on DNA counterion atmosphere.

Authors:  S Flock; R Labarbe; C Houssier
Journal:  Biophys J       Date:  1996-09       Impact factor: 4.033

6.  Distribution of ions around DNA, probed by energy transfer.

Authors:  T G Wensel; C F Meares; V Vlachy; J B Matthew
Journal:  Proc Natl Acad Sci U S A       Date:  1986-05       Impact factor: 11.205

7.  Detecting Counterion Dynamics in DNA-Protein Association.

Authors:  Channing C Pletka; Ridvan Nepravishta; Junji Iwahara
Journal:  Angew Chem Int Ed Engl       Date:  2019-12-03       Impact factor: 15.336

8.  Spermidine-Deoxyribonucleic acid interaction in vitro and in Escherichia coli.

Authors:  R L Rubin
Journal:  J Bacteriol       Date:  1977-02       Impact factor: 3.490

9.  Hydrogen-bonded protons in the tertiary structure of yeast tRNAPhe in solution.

Authors:  R Römer; V Varadi
Journal:  Proc Natl Acad Sci U S A       Date:  1977-04       Impact factor: 11.205

10.  Importance of coulombic end effects on cation accumulation near oligoelectrolyte B-DNA: a demonstration using 23Na NMR.

Authors:  V M Stein; J P Bond; M W Capp; C F Anderson; M T Record
Journal:  Biophys J       Date:  1995-03       Impact factor: 4.033

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