Literature DB >> 16585706

Pelagibaca bermudensis gen. nov., sp. nov., a novel marine bacterium within the Roseobacter clade in the order Rhodobacterales.

Jang-Cheon Cho1, Stephen J Giovannoni2.   

Abstract

A Gram-negative, chemoheterotrophic, facultatively anaerobic, slightly halophilic, oval-shaped marine bacterium, designated HTCC2601T, was isolated from the western Sargasso Sea by high-throughput culturing involving dilution to extinction. Although the 16S rRNA gene sequence similarity between the isolate and Salipiger mucosus was 96.5 %, phylogenetic analyses using different treeing algorithms clearly indicated that the strain forms a distinct lineage within a clade containing the recently classified genera Salipiger and Palleronia in the order Rhodobacterales of the Alphaproteobacteria. The DNA-DNA relatedness between strain HTCC2601T and S. mucosus was 26.3 %. Strain HTCC2601T utilized a wide range of carbohydrates, including hexose monomers, sugar alcohols, organic acids and amino acids, as sole carbon sources. The DNA G+C content of strain HTCC2601T was 65.4 mol%, and the predominant constituents of the cellular fatty acids were 18 : 1omega7c (79.7 %) and 11-methyl 18 : 1omega7c (7.5 %). The strain differed from members of the closely related genera Salipiger and Palleronia in its morphological, biochemical and ecological characteristics. On the basis of the taxonomic data obtained in this study, a novel genus and species, Pelagibaca bermudensis gen. nov., sp. nov., is proposed; HTCC2601T (=KCTC 12554T = JCM 13377T) is the type strain of Pelagibaca bermudensis.

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Year:  2006        PMID: 16585706     DOI: 10.1099/ijs.0.64063-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  11 in total

1.  Genome sequences of Pelagibaca bermudensis HTCC2601T and Maritimibacter alkaliphilus HTCC2654T, the type strains of two marine Roseobacter genera.

Authors:  J Cameron Thrash; Jang-Cheon Cho; Steve Ferriera; Justin Johnson; Kevin L Vergin; Stephen J Giovannoni
Journal:  J Bacteriol       Date:  2010-08-20       Impact factor: 3.490

2.  Complete genome sequence of strain HTCC2503T of Parvularcula bermudensis, the type species of the order "Parvularculales" in the class Alphaproteobacteria.

Authors:  Hyun-Myung Oh; Ilnam Kang; Kevin L Vergin; Dongmin Kang; Kwang-Hyun Rhee; Stephen J Giovannoni; Jang-Cheon Cho
Journal:  J Bacteriol       Date:  2010-10-29       Impact factor: 3.490

Review 3.  Surface colonization by marine roseobacters: integrating genotype and phenotype.

Authors:  Rachael N Slightom; Alison Buchan
Journal:  Appl Environ Microbiol       Date:  2009-08-07       Impact factor: 4.792

4.  Molecular analysis of the diversity of sulfate-reducing and sulfur-oxidizing prokaryotes in the environment, using aprA as functional marker gene.

Authors:  Birte Meyer; Jan Kuever
Journal:  Appl Environ Microbiol       Date:  2007-10-05       Impact factor: 4.792

5.  Isolation, cultivation, and genome analysis of proteorhodopsin-containing SAR116-clade strain Candidatus Puniceispirillum marinum IMCC1322.

Authors:  Junhak Lee; Kae Kyoung Kwon; Seung-Il Lim; Jaeho Song; Ah Reum Choi; Sung-Hyun Yang; Kwang-Hwan Jung; Jung-Hyun Lee; Sung Gyun Kang; Hyun-Myung Oh; Jang-Cheon Cho
Journal:  J Microbiol       Date:  2019-06-14       Impact factor: 3.422

6.  Genomic taxonomy of the genus prochlorococcus.

Authors:  Cristiane C Thompson; Genivaldo G Z Silva; Nayra M Vieira; Robert Edwards; Ana Carolina P Vicente; Fabiano L Thompson
Journal:  Microb Ecol       Date:  2013-08-21       Impact factor: 4.552

7.  Experimental identification and in silico prediction of bacterivory in green algae.

Authors:  Nicholas A Bock; Sophie Charvet; John Burns; Yangtsho Gyaltshen; Andrey Rozenberg; Solange Duhamel; Eunsoo Kim
Journal:  ISME J       Date:  2021-03-02       Impact factor: 10.302

8.  Complete genome sequence of the bacteriochlorophyll a-containing Roseibacterium elongatum type strain (DSM 19469(T)), a representative of the Roseobacter group isolated from Australian coast sand.

Authors:  Thomas Riedel; Anne Fiebig; Markus Göker; Hans-Peter Klenk
Journal:  Stand Genomic Sci       Date:  2014-03-28

9.  Pelagibaca bermudensis promotes biofuel competence of Tetraselmis striata in a broad range of abiotic stressors: dynamics of quorum-sensing precursors and strategic improvement in lipid productivity.

Authors:  Shailesh Kumar Patidar; Sae-Hee Kim; Jin Ho Kim; Jungsoo Park; Bum Soo Park; Myung-Soo Han
Journal:  Biotechnol Biofuels       Date:  2018-04-07       Impact factor: 6.040

10.  Comparative Genomics and Mutational Analysis Reveals a Novel XoxF-Utilizing Methylotroph in the Roseobacter Group Isolated From the Marine Environment.

Authors:  Alexandra M Howat; John Vollmers; Martin Taubert; Carolina Grob; Joanna L Dixon; Jonathan D Todd; Yin Chen; Anne-Kristin Kaster; J C Murrell
Journal:  Front Microbiol       Date:  2018-04-27       Impact factor: 5.640

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