Literature DB >> 16582487

Crystallization and preliminary X-ray analysis of the tRNA thiolation enzyme MnmA from Escherichia coli complexed with tRNA(Glu).

Tomoyuki Numata1, Yoshiho Ikeuchi, Shuya Fukai, Hiroaki Adachi, Hiroyoshi Matsumura, Kazufumi Takano, Satoshi Murakami, Tsuyoshi Inoue, Yusuke Mori, Takatomo Sasaki, Tsutomu Suzuki, Osamu Nureki.   

Abstract

MnmA catalyzes a sulfuration reaction to synthesize 2-thiouridine at the wobble positions of tRNA(Glu), tRNA(Gln) and tRNA(Lys) in Escherichia coli. The binary complex of MnmA and tRNA(Glu) was crystallized in two different crystal forms: forms I and II. Cocrystallization of MnmA-tRNA(Glu) with ATP yielded form III crystals. The three crystal forms diffracted to 3.1, 3.4 and 3.4 angstroms resolution, respectively, using synchrotron radiation at SPring-8. These crystals belong to space groups C2, I2(1)2(1)2(1) and C2, with unit-cell parameters a = 225.4, b = 175.8, c = 53.0 angstroms, beta = 101.6 degrees, a = 101.5, b = 108.0, c = 211.2 A and a = 238.1, b = 102.1, c = 108.2 angstroms, beta = 117.0 degrees, respectively. The asymmetric units of these crystals are expected to contain two, one and two MnmA-tRNA(Glu) complexes, respectively.

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Year:  2006        PMID: 16582487      PMCID: PMC2222564          DOI: 10.1107/S174430910600738X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  10 in total

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2.  Improvement of reading frame maintenance is a common function for several tRNA modifications.

Authors:  J Urbonavicius; Q Qian; J M Durand; T G Hagervall; G R Björk
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3.  Mechanistic insights into sulfur relay by multiple sulfur mediators involved in thiouridine biosynthesis at tRNA wobble positions.

Authors:  Yoshiho Ikeuchi; Naoki Shigi; Jun-Ichi Kato; Akiko Nishimura; Tsutomu Suzuki
Journal:  Mol Cell       Date:  2006-01-06       Impact factor: 17.970

4.  Single atom modification (O-->S) of tRNA confers ribosome binding.

Authors:  S S Ashraf; E Sochacka; R Cain; R Guenther; A Malkiewicz; P F Agris
Journal:  RNA       Date:  1999-02       Impact factor: 4.942

5.  The modification of the wobble base of tRNAGlu modulates the translation rate of glutamic acid codons in vivo.

Authors:  M K Krüger; S Pedersen; T G Hagervall; M A Sørensen
Journal:  J Mol Biol       Date:  1998-12-04       Impact factor: 5.469

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Authors:  Charles T Lauhon
Journal:  J Bacteriol       Date:  2002-12       Impact factor: 3.490

7.  Molecular mechanism of codon recognition by tRNA species with modified uridine in the first position of the anticodon.

Authors:  S Yokoyama; T Watanabe; K Murao; H Ishikura; Z Yamaizumi; S Nishimura; T Miyazawa
Journal:  Proc Natl Acad Sci U S A       Date:  1985-08       Impact factor: 11.205

8.  A 2-thiouridine derivative in tRNAGlu is a positive determinant for aminoacylation by Escherichia coli glutamyl-tRNA synthetase.

Authors:  L A Sylvers; K C Rogers; M Shimizu; E Ohtsuka; D Söll
Journal:  Biochemistry       Date:  1993-04-20       Impact factor: 3.162

9.  MnmA and IscS are required for in vitro 2-thiouridine biosynthesis in Escherichia coli.

Authors:  Ravi Kambampati; Charles T Lauhon
Journal:  Biochemistry       Date:  2003-02-04       Impact factor: 3.162

10.  Structural basis for sulfur relay to RNA mediated by heterohexameric TusBCD complex.

Authors:  Tomoyuki Numata; Shuya Fukai; Yoshiho Ikeuchi; Tsutomu Suzuki; Osamu Nureki
Journal:  Structure       Date:  2006-02       Impact factor: 5.006

  10 in total
  2 in total

1.  TusA Is a Versatile Protein That Links Translation Efficiency to Cell Division in Escherichia coli.

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Journal:  J Bacteriol       Date:  2021-03-08       Impact factor: 3.490

Review 2.  Shared Sulfur Mobilization Routes for tRNA Thiolation and Molybdenum Cofactor Biosynthesis in Prokaryotes and Eukaryotes.

Authors:  Silke Leimkühler; Martin Bühning; Lena Beilschmidt
Journal:  Biomolecules       Date:  2017-01-14
  2 in total

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