Literature DB >> 16472754

Structural basis for sulfur relay to RNA mediated by heterohexameric TusBCD complex.

Tomoyuki Numata1, Shuya Fukai, Yoshiho Ikeuchi, Tsutomu Suzuki, Osamu Nureki.   

Abstract

Uridine at wobble position 34 of tRNA(Lys), tRNA(Glu), and tRNA(Gln) is exclusively modified into 2-thiouridine (s2U), which is crucial for both precise codon recognition and recognition by the cognate aminoacyl-tRNA synthetases. Recent Escherichia coli genetic studies revealed that the products of five novel genes, tusABCDE, function in the s2U modification. Here, we solved the 2.15 angstroms crystal structure of the E. coli TusBCD complex, a sulfur transfer mediator, forming a heterohexamer composed of a dimer of the heterotrimer. Structure-based sequence alignment suggested two putative active site Cys residues, Cys79 (in TusC) and Cys78 (in TusD), which are exposed on the hexameric complex. In vivo mutant analyses revealed that only Cys78, in the TusD subunit, participates in sulfur transfer during the s2U modification process. Since the single Cys acts as a catalytic residue, we proposed that TusBCD mediates sulfur relay via a putative persulfide state of the TusD subunit.

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Year:  2006        PMID: 16472754     DOI: 10.1016/j.str.2005.11.009

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  21 in total

1.  Crystallization and preliminary X-ray analysis of the tRNA thiolation enzyme MnmA from Escherichia coli complexed with tRNA(Glu).

Authors:  Tomoyuki Numata; Yoshiho Ikeuchi; Shuya Fukai; Hiroaki Adachi; Hiroyoshi Matsumura; Kazufumi Takano; Satoshi Murakami; Tsuyoshi Inoue; Yusuke Mori; Takatomo Sasaki; Tsutomu Suzuki; Osamu Nureki
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-03-10

Review 2.  Structure-based inference of molecular functions of proteins of unknown function from Berkeley Structural Genomics Center.

Authors:  Dong Hae Shin; Jingtong Hou; John-Marc Chandonia; Debanu Das; In-Geol Choi; Rosalind Kim; Sung-Hou Kim
Journal:  J Struct Funct Genomics       Date:  2007-09-02

Review 3.  Biosynthesis and Chemical Applications of Thioamides.

Authors:  Nilkamal Mahanta; D Miklos Szantai-Kis; E James Petersson; Douglas A Mitchell
Journal:  ACS Chem Biol       Date:  2019-01-30       Impact factor: 5.100

4.  From Suicide Enzyme to Catalyst: The Iron-Dependent Sulfide Transfer in Methanococcus jannaschii Thiamin Thiazole Biosynthesis.

Authors:  Bekir E Eser; Xuan Zhang; Prem K Chanani; Tadhg P Begley; Steven E Ealick
Journal:  J Am Chem Soc       Date:  2016-03-11       Impact factor: 15.419

5.  A role for the universal Kae1/Qri7/YgjD (COG0533) family in tRNA modification.

Authors:  Basma El Yacoubi; Isabelle Hatin; Christopher Deutsch; Tamer Kahveci; Jean-Pierre Rousset; Dirk Iwata-Reuyl; Alexey G Murzin; Valérie de Crécy-Lagard
Journal:  EMBO J       Date:  2011-02-01       Impact factor: 11.598

6.  A conserved modified wobble nucleoside (mcm5s2U) in lysyl-tRNA is required for viability in yeast.

Authors:  Glenn R Björk; Bo Huang; Olof P Persson; Anders S Byström
Journal:  RNA       Date:  2007-06-25       Impact factor: 4.942

7.  Allochromatium vinosum DsrC: solution-state NMR structure, redox properties, and interaction with DsrEFH, a protein essential for purple sulfur bacterial sulfur oxidation.

Authors:  John R Cort; Ute Selan; Andrea Schulte; Frauke Grimm; Michael A Kennedy; Christiane Dahl
Journal:  J Mol Biol       Date:  2008-07-16       Impact factor: 5.469

8.  Crystal structure and catalytic properties of Bacillus anthracis CoADR-RHD: implications for flavin-linked sulfur trafficking.

Authors:  Jamie R Wallen; T Conn Mallett; William Boles; Derek Parsonage; Cristina M Furdui; P Andrew Karplus; Al Claiborne
Journal:  Biochemistry       Date:  2009-10-13       Impact factor: 3.162

9.  New proteins involved in sulfur trafficking in the cytoplasm of Allochromatium vinosum.

Authors:  Yvonne Stockdreher; Marga Sturm; Michaele Josten; Hans-Georg Sahl; Nadine Dobler; Renate Zigann; Christiane Dahl
Journal:  J Biol Chem       Date:  2014-03-19       Impact factor: 5.157

10.  Structural insights into dissimilatory sulfite reductases: structure of desulforubidin from desulfomicrobium norvegicum.

Authors:  Tânia F Oliveira; Edward Franklin; José P Afonso; Amir R Khan; Neil J Oldham; Inês A C Pereira; Margarida Archer
Journal:  Front Microbiol       Date:  2011-04-13       Impact factor: 5.640

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