Literature DB >> 16582472

On the distribution of state values of reproducing cells.

Katsuhiko Sato1, Kunihiko Kaneko.   

Abstract

Characterizing a cell state by measuring the degree of gene expression as well as its noise has gathered much attention. The distribution of such state values (e.g., abundances of some proteins) over cells has been measured, and is not only a result of intracellular process, but is also influenced by the growth in cell number that depends on the state. By incorporating the growth-death process into the standard Fokker-Planck equation, a nonlinear temporal evolution equation of distribution is derived and then solved by means of eigenfunction expansions. This general formalism is applied to the linear relaxation case. First, when the growth rate of a cell increases linearly with the state value x, the shift of the average x due to the growth effect is shown to be proportional to the variance of x and the relaxation time, similar to the biological fluctuation-response relationship. Second, when there is a threshold value of x for growth, the existence of a critical growth rate, represented again by the variance and the relaxation time, is demonstrated. The relevance of the results to the analysis of biological data on the distribution of cell states, as obtained for example by flow cytometry, is discussed.

Mesh:

Year:  2006        PMID: 16582472     DOI: 10.1088/1478-3975/3/1/008

Source DB:  PubMed          Journal:  Phys Biol        ISSN: 1478-3967            Impact factor:   2.583


  7 in total

1.  Synthetic Turing protocells: vesicle self-reproduction through symmetry-breaking instabilities.

Authors:  Javier Macía; Ricard V Solé
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-10-29       Impact factor: 6.237

2.  Noise-driven growth rate gain in clonal cellular populations.

Authors:  Mikihiro Hashimoto; Takashi Nozoe; Hidenori Nakaoka; Reiko Okura; Sayo Akiyoshi; Kunihiko Kaneko; Edo Kussell; Yuichi Wakamoto
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-07       Impact factor: 11.205

3.  Stochastic adaptation and fold-change detection: from single-cell to population behavior.

Authors:  Tatiana T Marquez-Lago; André Leier
Journal:  BMC Syst Biol       Date:  2011-02-03

4.  Adaptation by stochastic switching of a monostable genetic circuit in Escherichia coli.

Authors:  Saburo Tsuru; Nao Yasuda; Yoshie Murakami; Junya Ushioda; Akiko Kashiwagi; Shingo Suzuki; Kotaro Mori; Bei-Wen Ying; Tetsuya Yomo
Journal:  Mol Syst Biol       Date:  2011-05-24       Impact factor: 11.429

5.  Inferring fitness landscapes and selection on phenotypic states from single-cell genealogical data.

Authors:  Takashi Nozoe; Edo Kussell; Yuichi Wakamoto
Journal:  PLoS Genet       Date:  2017-03-07       Impact factor: 5.917

6.  Phenotypic-dependent variability and the emergence of tolerance in bacterial populations.

Authors:  José Camacho Mateu; Matteo Sireci; Miguel A Muñoz
Journal:  PLoS Comput Biol       Date:  2021-09-23       Impact factor: 4.475

7.  Noise Expands the Response Range of the Bacillus subtilis Competence Circuit.

Authors:  Andrew Mugler; Mark Kittisopikul; Luke Hayden; Jintao Liu; Chris H Wiggins; Gürol M Süel; Aleksandra M Walczak
Journal:  PLoS Comput Biol       Date:  2016-03-22       Impact factor: 4.475

  7 in total

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