Literature DB >> 16581378

Thermodynamics Of alpha-Helix Formation.

George I Makhatadze1.   

Abstract

The alpha-helix was the first proposed and experimentally confirmed secondary structure. The elegant simplicity of the alpha-helical structure, stabilized by hydrogen bonding between the backbone carbonyl oxygen and the peptide amide four residues away, has captivated the scientific community. In proteins, alpha-helices are also stabilized by the so-called capping interactions that occur at both the C- and the N-termini of the helix. This chapter provides a brief historical overview of the thermodynamic studies of the energetics of helix formation, and reviews recent progress in our understanding of the thermodynamics of helix formation.

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Year:  2005        PMID: 16581378     DOI: 10.1016/S0065-3233(05)72008-8

Source DB:  PubMed          Journal:  Adv Protein Chem        ISSN: 0065-3233


  9 in total

1.  Predicting the folding pathway of engrailed homeodomain with a probabilistic roadmap enhanced reaction-path algorithm.

Authors:  Da-Wei Li; Haijun Yang; Li Han; Shuanghong Huo
Journal:  Biophys J       Date:  2007-11-16       Impact factor: 4.033

2.  Propensities of Some Amino Acid Pairings in α-Helices Vary with Length.

Authors:  Cevdet Nacar
Journal:  Protein J       Date:  2022-09-28       Impact factor: 4.000

3.  n-->pi* interactions in proteins.

Authors:  Gail J Bartlett; Amit Choudhary; Ronald T Raines; Derek N Woolfson
Journal:  Nat Chem Biol       Date:  2010-07-11       Impact factor: 15.040

4.  Context-independent, temperature-dependent helical propensities for amino acid residues.

Authors:  Robert J Moreau; Christian R Schubert; Khaled A Nasr; Marianna Török; Justin S Miller; Robert J Kennedy; Daniel S Kemp
Journal:  J Am Chem Soc       Date:  2009-09-16       Impact factor: 15.419

5.  Structure of the nucleocapsid-binding domain from the mumps virus polymerase; an example of protein folding induced by crystallization.

Authors:  Richard L Kingston; Leslie S Gay; Walter S Baase; Brian W Matthews
Journal:  J Mol Biol       Date:  2008-01-11       Impact factor: 5.469

Review 6.  Life at the border: adaptation of proteins to anisotropic membrane environment.

Authors:  Irina D Pogozheva; Henry I Mosberg; Andrei L Lomize
Journal:  Protein Sci       Date:  2014-07-02       Impact factor: 6.725

7.  CAPS-DB: a structural classification of helix-capping motifs.

Authors:  Joan Segura; Baldomero Oliva; Narcis Fernandez-Fuentes
Journal:  Nucleic Acids Res       Date:  2011-10-22       Impact factor: 16.971

8.  The sequence-ensemble relationship in fuzzy protein complexes.

Authors:  San Hadži; Remy Loris; Jurij Lah
Journal:  Proc Natl Acad Sci U S A       Date:  2021-09-14       Impact factor: 11.205

9.  From Protein Design to the Energy Landscape of a Cold Unfolding Protein.

Authors:  Surya V S R K Pulavarti; Jack B Maguire; Shirley Yuen; Joseph S Harrison; Jermel Griffin; Lakshmanane Premkumar; Edward A Esposito; George I Makhatadze; Angel E Garcia; Thomas M Weiss; Edward H Snell; Brian Kuhlman; Thomas Szyperski
Journal:  J Phys Chem B       Date:  2022-02-07       Impact factor: 3.466

  9 in total

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