Literature DB >> 16574146

The stability of transmembrane helix interactions measured in a biological membrane.

Carmen Finger1, Thomas Volkmer, Alexander Prodöhl, Daniel E Otzen, Donald M Engelman, Dirk Schneider.   

Abstract

Despite some promising progress in the understanding of membrane protein folding and assembly, there is little experimental information regarding the thermodynamic stability of transmembrane helix interactions and even less on the stability of transmembrane helix-helix interactions in a biological membrane. Here we describe an approach that allows quantitative measurement of transmembrane helix interactions in a biological membrane, and calculation of changes in the interaction free energy resulting from substitution of single amino acids. Dimerization of several variants of the glycophorin A transmembrane domain are characterized and compared to the wild-type (wt) glycophorin A transmembrane helix dimerization. The calculated DeltaDeltaG(app) values are further compared with values found in the literature. In addition, we compare interactions between the wt glycophorin A transmembrane domain and helices in which critical glycine residues are replaced by alanine or serine, respectively. The data demonstrate that replacement of the glycine residues by serine is less destabilizing than replacement by alanine with a DeltaDeltaG(app) value of about 0.4 kcal/mol. Our study comprises the first measurement of a transmembrane helix interaction in a biological membrane, and we are optimistic that it can be further developed and applied.

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Year:  2006        PMID: 16574146     DOI: 10.1016/j.jmb.2006.02.065

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  26 in total

1.  Method to measure strong protein-protein interactions in lipid bilayers using a steric trap.

Authors:  Heedeok Hong; Tracy M Blois; Zheng Cao; James U Bowie
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-01       Impact factor: 11.205

2.  Changes in apparent free energy of helix-helix dimerization in a biological membrane due to point mutations.

Authors:  Mylinh T Duong; Todd M Jaszewski; Karen G Fleming; Kevin R MacKenzie
Journal:  J Mol Biol       Date:  2007-05-18       Impact factor: 5.469

3.  Molecular simulations of lipid-mediated protein-protein interactions.

Authors:  Frédérick Jean-Marie de Meyer; Maddalena Venturoli; Berend Smit
Journal:  Biophys J       Date:  2008-05-16       Impact factor: 4.033

4.  The vesicle-inducing protein 1 from Synechocystis sp. PCC 6803 organizes into diverse higher-ordered ring structures.

Authors:  Eva Fuhrmann; Jelle B Bultema; Uwe Kahmann; Eva Rupprecht; Egbert J Boekema; Dirk Schneider
Journal:  Mol Biol Cell       Date:  2009-09-23       Impact factor: 4.138

5.  Hepatitis C virus RNA replication and virus particle assembly require specific dimerization of the NS4A protein transmembrane domain.

Authors:  Andrew Kohlway; Nathan Pirakitikulr; Francisco N Barrera; Olga Potapova; Donald M Engelman; Anna M Pyle; Brett D Lindenbach
Journal:  J Virol       Date:  2013-10-30       Impact factor: 5.103

6.  The SCHOOL of nature: I. Transmembrane signaling.

Authors:  Alexander B Sigalov
Journal:  Self Nonself       Date:  2010-01

7.  NMR Investigation of Structures of G-protein Coupled Receptor Folding Intermediates.

Authors:  Martin Poms; Philipp Ansorge; Luis Martinez-Gil; Simon Jurt; Daniel Gottstein; Katrina E Fracchiolla; Leah S Cohen; Peter Güntert; Ismael Mingarro; Fred Naider; Oliver Zerbe
Journal:  J Biol Chem       Date:  2016-11-18       Impact factor: 5.157

Review 8.  Transmembrane helix dimerization: beyond the search for sequence motifs.

Authors:  Edwin Li; William C Wimley; Kalina Hristova
Journal:  Biochim Biophys Acta       Date:  2011-09-01

9.  Hill coefficient analysis of transmembrane helix dimerization.

Authors:  Ricky Soong; Mikhail Merzlyakov; Kalina Hristova
Journal:  J Membr Biol       Date:  2009-07-15       Impact factor: 1.843

10.  Polar residues and their positional context dictate the transmembrane domain interactions of influenza A neuraminidases.

Authors:  Johan Nordholm; Diogo V da Silva; Justina Damjanovic; Dan Dou; Robert Daniels
Journal:  J Biol Chem       Date:  2013-02-27       Impact factor: 5.157

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