Literature DB >> 19603128

Hill coefficient analysis of transmembrane helix dimerization.

Ricky Soong1, Mikhail Merzlyakov, Kalina Hristova.   

Abstract

Here, we employed the Hill equation, used broadly to characterize cooperativity in protein-ligand binding, to describe the dimerization of transmembrane (TM) helices in hydrophobic environments. The Hill analysis of wild-type fibroblast growth factor receptor 3 (FGFR3) TM domain dimerization gives a Hill coefficient of approximately 1 for lipid bilayers but only approximately 0.2 for sodium dodecyl sulfate (SDS) micelles. We propose that this finding is indicative of heterogeneity in FGFR3 TM dimer structure and stability in SDS micelles. We further speculate that (1) the Hill equation can be used as a tool to assess the existence of multiple structural states of TM dimers in different hydrophobic environments and (2) the structural heterogeneity, detectable by Hill analysis, may be the underlying reason for the broad peaks and the low resolution NMR studies of peptides in detergents.

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Year:  2009        PMID: 19603128      PMCID: PMC3020080          DOI: 10.1007/s00232-009-9185-1

Source DB:  PubMed          Journal:  J Membr Biol        ISSN: 0022-2631            Impact factor:   1.843


  30 in total

Review 1.  Membrane protein folding and stability: physical principles.

Authors:  S H White; W C Wimley
Journal:  Annu Rev Biophys Biomol Struct       Date:  1999

2.  Detergents modulate dimerization, but not helicity, of the glycophorin A transmembrane domain.

Authors:  L E Fisher; D M Engelman; J N Sturgis
Journal:  J Mol Biol       Date:  1999-10-29       Impact factor: 5.469

Review 3.  How membranes shape protein structure.

Authors:  S H White; A S Ladokhin; S Jayasinghe; K Hristova
Journal:  J Biol Chem       Date:  2001-06-29       Impact factor: 5.157

4.  Comparing function and structure between entire proteomes.

Authors:  J Liu; B Rost
Journal:  Protein Sci       Date:  2001-10       Impact factor: 6.725

5.  Protein folding in membranes: determining energetics of peptide-bilayer interactions.

Authors:  S H White; W C Wimley; A S Ladokhin; K Hristova
Journal:  Methods Enzymol       Date:  1998       Impact factor: 1.600

6.  Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms.

Authors:  E Wallin; G von Heijne
Journal:  Protein Sci       Date:  1998-04       Impact factor: 6.725

7.  A fluorescence energy transfer method for analyzing protein oligomeric structure: application to phospholamban.

Authors:  M Li; L G Reddy; R Bennett; N D Silva; L R Jones; D D Thomas
Journal:  Biophys J       Date:  1999-05       Impact factor: 4.033

8.  A transmembrane helix dimer: structure and implications.

Authors:  K R MacKenzie; J H Prestegard; D M Engelman
Journal:  Science       Date:  1997-04-04       Impact factor: 47.728

9.  Glycophorin A helical transmembrane domains dimerize in phospholipid bilayers: a resonance energy transfer study.

Authors:  B D Adair; D M Engelman
Journal:  Biochemistry       Date:  1994-05-10       Impact factor: 3.162

10.  Polar residues in transmembrane helices can decrease electrophoretic mobility in polyacrylamide gels without causing helix dimerization.

Authors:  William F Walkenhorst; Mikhail Merzlyakov; Kalina Hristova; William C Wimley
Journal:  Biochim Biophys Acta       Date:  2009-03-02
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  3 in total

Review 1.  Receptor tyrosine kinase transmembrane domains: Function, dimer structure and dimerization energetics.

Authors:  Edwin Li; Kalina Hristova
Journal:  Cell Adh Migr       Date:  2010-04-23       Impact factor: 3.405

2.  Measuring the energetics of membrane protein dimerization in mammalian membranes.

Authors:  Lirong Chen; Lawrence Novicky; Mikhail Merzlyakov; Tihomir Hristov; Kalina Hristova
Journal:  J Am Chem Soc       Date:  2010-03-17       Impact factor: 15.419

3.  Isolated Toll-like receptor transmembrane domains are capable of oligomerization.

Authors:  James I Godfroy; Mohammad Roostan; Yurii S Moroz; Ivan V Korendovych; Hang Yin
Journal:  PLoS One       Date:  2012-11-14       Impact factor: 3.240

  3 in total

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