Literature DB >> 16567415

Distinct DNA methylation activity of Dnmt3a and Dnmt3b towards naked and nucleosomal DNA.

Hideyuki Takeshima1, Isao Suetake, Hideto Shimahara, Kiyoe Ura, Shin-ichi Tate, Shoji Tajima.   

Abstract

In mammals, the resetting of DNA methylation patterns in early embryos and germ cells is crucial for development. De novo type DNA methyltransferases Dnmt3a and Dnmt3b are responsible for creating DNA methylation patterns during embryogenesis and in germ cells. Although their in vitro DNA methylation properties are similar, Dnmt3a and Dnmt3b methylate different genomic DNA regions in vivo. In the present study, we have examined the DNA methylation activity of Dnmt3a and Dnmt3b towards nucleosomes reconstituted from recombinant histones and DNAs, and compared it to that of the corresponding naked DNAs. Dnmt3a showed higher DNA methylation activity than Dnmt3b towards naked DNA and the naked part of nucleosomal DNA. On the other hand, Dnmt3a scarcely methylated the DNA within the nucleosome core region, while Dnmt3b significantly did, although the activity was low. We propose that the preferential DNA methylation activity of Dnmt3a towards the naked part of nucleosomal DNA and the significant methylation activity of Dnmt3b towards the nucleosome core region contribute to their distinct methylation of genomic DNA in vivo.

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Year:  2006        PMID: 16567415     DOI: 10.1093/jb/mvj044

Source DB:  PubMed          Journal:  J Biochem        ISSN: 0021-924X            Impact factor:   3.387


  29 in total

1.  DNA methylation: superior or subordinate in the epigenetic hierarchy?

Authors:  Bilian Jin; Yajun Li; Keith D Robertson
Journal:  Genes Cancer       Date:  2011-06

2.  Sodium butyrate epigenetically modulates high-fat diet-induced skeletal muscle mitochondrial adaptation, obesity and insulin resistance through nucleosome positioning.

Authors:  Tara M Henagan; Barbara Stefanska; Zhide Fang; Alexandra M Navard; Jianping Ye; Natalie R Lenard; Prasad P Devarshi
Journal:  Br J Pharmacol       Date:  2015-02-27       Impact factor: 8.739

3.  The DNMT3B -579 G>T promoter polymorphism and risk of lung cancer.

Authors:  Hui Liu; Yifei Jiao; Yana Guan; Yingbin Lao; Chengcheng Zhao; Hong Fan
Journal:  Exp Ther Med       Date:  2011-12-19       Impact factor: 2.447

4.  Dnmt1-independent CG methylation contributes to nucleosome positioning in diverse eukaryotes.

Authors:  Jason T Huff; Daniel Zilberman
Journal:  Cell       Date:  2014-03-13       Impact factor: 41.582

5.  Interactions of HP1 Bound to H3K9me3 Dinucleosome by Molecular Simulations and Biochemical Assays.

Authors:  Shuhei Watanabe; Yuichi Mishima; Masahiro Shimizu; Isao Suetake; Shoji Takada
Journal:  Biophys J       Date:  2018-04-21       Impact factor: 4.033

Review 6.  DNMT3A in haematological malignancies.

Authors:  Liubin Yang; Rachel Rau; Margaret A Goodell
Journal:  Nat Rev Cancer       Date:  2015-02-19       Impact factor: 60.716

7.  CB1-receptor knockout neonatal mice are protected against ethanol-induced impairments of DNMT1, DNMT3A, and DNA methylation.

Authors:  Nagaraja N Nagre; Shivakumar Subbanna; Madhu Shivakumar; Delphine Psychoyos; Balapal S Basavarajappa
Journal:  J Neurochem       Date:  2015-01-27       Impact factor: 5.372

8.  A single amino acid substitution confers enhanced methylation activity of mammalian Dnmt3b on chromatin DNA.

Authors:  Li Shen; Ge Gao; Ying Zhang; He Zhang; Zhiqiang Ye; Shichao Huang; Jinyan Huang; Jiuhong Kang
Journal:  Nucleic Acids Res       Date:  2010-05-27       Impact factor: 16.971

9.  Selective anchoring of DNA methyltransferases 3A and 3B to nucleosomes containing methylated DNA.

Authors:  Shinwu Jeong; Gangning Liang; Shikhar Sharma; Joy C Lin; Si Ho Choi; Han Han; Christine B Yoo; Gerda Egger; Allen S Yang; Peter A Jones
Journal:  Mol Cell Biol       Date:  2009-07-20       Impact factor: 4.272

10.  DNMT3B 579 G>T promoter polymorphism and risk of esophagus carcinoma in Chinese.

Authors:  Hong Fan; Dong-Sheng Liu; Shu-Hong Zhang; Jia-Bo Hu; Feng Zhang; Zhu-Jiang Zhao
Journal:  World J Gastroenterol       Date:  2008-04-14       Impact factor: 5.742

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