Literature DB >> 16563741

Recent atomic models of amyloid fibril structure.

Rebecca Nelson1, David Eisenberg.   

Abstract

Despite the difficulties associated with determining atomic-level structures for materials that are fibrous, structural biologists are making headway in understanding the architecture of amyloid-like fibrils. It has long been recognized that these fibrils contain a cross-beta spine, with beta-strands perpendicular to the fibril axis. Recently, atomic structures have been determined for some of these cross-beta spines, revealing a pair of beta-sheets mated closely together by intermeshing sidechains in what has been termed a steric zipper. To explain the conversion of proteins from soluble to fibrous forms, several types of models have been proposed: refolding, natively disordered and gain of interaction. The gain-of-interaction models may additionally be subdivided into direct stacking, cross-beta spine, three-dimensional domain swapping and three-dimensional domain swapping with a cross-beta spine.

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Year:  2006        PMID: 16563741     DOI: 10.1016/j.sbi.2006.03.007

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  103 in total

1.  Dissecting structure of prion amyloid fibrils by hydrogen-deuterium exchange ultraviolet Raman spectroscopy.

Authors:  Victor Shashilov; Ming Xu; Natallia Makarava; Regina Savtchenko; Ilia V Baskakov; Igor K Lednev
Journal:  J Phys Chem B       Date:  2012-06-26       Impact factor: 2.991

2.  Potential aggregation-prone regions in complementarity-determining regions of antibodies and their contribution towards antigen recognition: a computational analysis.

Authors:  Xiaoling Wang; Satish K Singh; Sandeep Kumar
Journal:  Pharm Res       Date:  2010-04-27       Impact factor: 4.200

3.  Can molecular dynamics simulations assist in design of specific inhibitors and imaging agents of amyloid aggregation? Structure, stability and free energy predictions for amyloid oligomers of VQIVYK, MVGGVV and LYQLEN.

Authors:  Workalemahu Mikre Berhanu; Artëm E Masunov
Journal:  J Mol Model       Date:  2010-12-21       Impact factor: 1.810

4.  Cell Adhesion on Amyloid Fibrils Lacking Integrin Recognition Motif.

Authors:  Reeba S Jacob; Edna George; Pradeep K Singh; Shimul Salot; Arunagiri Anoop; Narendra Nath Jha; Shamik Sen; Samir K Maji
Journal:  J Biol Chem       Date:  2016-01-07       Impact factor: 5.157

5.  In vitro polymerization of a functional Escherichia coli amyloid protein.

Authors:  Xuan Wang; Daniel R Smith; Jonathan W Jones; Matthew R Chapman
Journal:  J Biol Chem       Date:  2006-12-12       Impact factor: 5.157

6.  Monomer adds to preformed structured oligomers of Abeta-peptides by a two-stage dock-lock mechanism.

Authors:  Phuong H Nguyen; Mai Suan Li; Gerhard Stock; John E Straub; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-26       Impact factor: 11.205

7.  Protein particulates: another generic form of protein aggregation?

Authors:  Mark R H Krebs; Glyn L Devlin; A M Donald
Journal:  Biophys J       Date:  2006-11-17       Impact factor: 4.033

Review 8.  Nanotools for megaproblems: probing protein misfolding diseases using nanomedicine modus operandi.

Authors:  Vladimir N Uversky; Alexander V Kabanov; Yuri L Lyubchenko
Journal:  J Proteome Res       Date:  2006-10       Impact factor: 4.466

9.  Structures and dynamics of β-barrel oligomer intermediates of amyloid-beta16-22 aggregation.

Authors:  Xinwei Ge; Yunxiang Sun; Feng Ding
Journal:  Biochim Biophys Acta Biomembr       Date:  2018-03-14       Impact factor: 3.747

Review 10.  Lessons learned from protein aggregation: toward technological and biomedical applications.

Authors:  César L Avila; Silvina Chaves; Sergio B Socias; Esteban Vera-Pingitore; Florencia González-Lizárraga; Cecilia Vera; Diego Ploper; Rosana Chehín
Journal:  Biophys Rev       Date:  2017-09-13
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