Literature DB >> 16547947

Decoding the rice genome.

Shubha Vij1, Vikrant Gupta, Dibyendu Kumar, Ravi Vydianathan, Saurabh Raghuvanshi, Paramjit Khurana, Jitendra P Khurana, Akhilesh K Tyagi.   

Abstract

Rice cultivation is one of the most important agricultural activities on earth, with nearly 90% of it being produced in Asia. It belongs to the family of crops that includes wheat, maize and barley, and it supplies more than 50% of calories consumed by the world population. Its immense economic value and a relatively small genome size makes it a focal point for scientific investigations, so much so that four whole genome sequence drafts with varying qualities have been generated by both public and privately funded ventures. The availability of a complete and high-quality map-based sequence has provided the opportunity to study genome organization and evolution. Most importantly, the order and identity of 37,544 genes of rice have been unraveled. The sequence provides the required ingredients for functional genomics and molecular breeding programs aimed at unraveling intricate cellular processes and improving rice productivity.

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Year:  2006        PMID: 16547947     DOI: 10.1002/bies.20399

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  14 in total

1.  Genome-wide analysis of the stress associated protein (SAP) gene family containing A20/AN1 zinc-finger(s) in rice and their phylogenetic relationship with Arabidopsis.

Authors:  Shubha Vij; Akhilesh K Tyagi
Journal:  Mol Genet Genomics       Date:  2006-10-11       Impact factor: 3.291

2.  Genome-wide analysis of intronless genes in rice and Arabidopsis.

Authors:  Mukesh Jain; Paramjit Khurana; Akhilesh K Tyagi; Jitendra P Khurana
Journal:  Funct Integr Genomics       Date:  2007-06-20       Impact factor: 3.410

3.  A 5-methylcytosine DNA glycosylase/lyase demethylates the retrotransposon Tos17 and promotes its transposition in rice.

Authors:  Honggui La; Bo Ding; Gyan P Mishra; Bo Zhou; Hongmei Yang; Maria del Rosario Bellizzi; Songbiao Chen; Blake C Meyers; Zhaohua Peng; Jian-Kang Zhu; Guo-Liang Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-06       Impact factor: 11.205

Review 4.  Rice and Arabidopsis BBX proteins: toward genetic engineering of abiotic stress resistant crops.

Authors:  Wathsala W Bandara; W S S Wijesundera; Chamari Hettiarachchi
Journal:  3 Biotech       Date:  2022-07-10       Impact factor: 2.893

5.  Genome-wide analysis of conservation and divergence of microsatellites in rice.

Authors:  Manish Roorkiwal; Atul Grover; Prakash C Sharma
Journal:  Mol Genet Genomics       Date:  2009-05-30       Impact factor: 3.291

6.  Structural characterization and expression analysis of the SERK/SERL gene family in rice (Oryza sativa).

Authors:  Bhumica Singla; Jitendra P Khurana; Paramjit Khurana
Journal:  Int J Plant Genomics       Date:  2009-09-13

7.  The rice B-box zinc finger gene family: genomic identification, characterization, expression profiling and diurnal analysis.

Authors:  Jianyan Huang; Xiaobo Zhao; Xiaoyu Weng; Lei Wang; Weibo Xie
Journal:  PLoS One       Date:  2012-10-31       Impact factor: 3.240

8.  MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress.

Authors:  Rita Arora; Pinky Agarwal; Swatismita Ray; Ashok Kumar Singh; Vijay Pal Singh; Akhilesh K Tyagi; Sanjay Kapoor
Journal:  BMC Genomics       Date:  2007-07-18       Impact factor: 3.969

9.  Discovery and assembly of repeat family pseudomolecules from sparse genomic sequence data using the Assisted Automated Assembler of Repeat Families (AAARF) algorithm.

Authors:  Jeremy D DeBarry; Renyi Liu; Jeffrey L Bennetzen
Journal:  BMC Bioinformatics       Date:  2008-05-13       Impact factor: 3.169

10.  Genome survey sequencing and genetic background characterization of Gracilariopsis lemaneiformis (Rhodophyta) based on next-generation sequencing.

Authors:  Wei Zhou; Yiyi Hu; Zhenghong Sui; Feng Fu; Jinguo Wang; Lianpeng Chang; Weihua Guo; Binbin Li
Journal:  PLoS One       Date:  2013-07-16       Impact factor: 3.240

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