Literature DB >> 16540695

Assembly of Snu114 into U5 snRNP requires Prp8 and a functional GTPase domain.

Tamara J Brenner1, Christine Guthrie.   

Abstract

Snu114 is a U5 snRNP protein essential for pre-mRNA splicing. Based on its homology with the ribosomal translocase EF-G, it is thought that GTP hydrolysis by Snu114 induces conformational rearrangements in the spliceosome. We recently identified allele-specific genetic interactions between SNU114 and genes encoding three other U5 snRNP components, Prp8 and two RNA-dependent ATPases, Prp28 and Brr2, required for destabilization of U1 and U4 snRNPs prior to catalysis. To shed more light onto the function of Snu114, we have now directly analyzed snRNP and spliceosome assembly in SNU114 mutant extracts. The Snu114-60 C-terminal truncation mutant, which is synthetically lethal with the ATPase mutants prp28-1 and brr2-1, assembles spliceosomes but subsequently blocks U4 snRNP release. Conversely, mutants in the GTPase domain fail to assemble U5 snRNPs. These mutations prevent the interaction of Snu114 with Prp8 as well as with U5 snRNA. Since Prp8 is thought to regulate the activity of the DEAD-box ATPases, this strategy of snRNP assembly could ensure that Prp8 activity is itself regulated by a GTP-dependent mechanism.

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Year:  2006        PMID: 16540695      PMCID: PMC1440915          DOI: 10.1261/rna.2319806

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  42 in total

1.  Composition and functional characterization of the yeast spliceosomal penta-snRNP.

Authors:  Scott W Stevens; Daniel E Ryan; Helen Y Ge; Roger E Moore; Mary K Young; Terry D Lee; John Abelson
Journal:  Mol Cell       Date:  2002-01       Impact factor: 17.970

Review 2.  Spliceosomal UsnRNP biogenesis, structure and function.

Authors:  C L Will; R Lührmann
Journal:  Curr Opin Cell Biol       Date:  2001-06       Impact factor: 8.382

3.  Distinct domains of splicing factor Prp8 mediate different aspects of spliceosome activation.

Authors:  Andreas N Kuhn; Elizabeth M Reichl; David A Brow
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-26       Impact factor: 11.205

4.  In vitro reconstitution of functional yeast U2 snRNPs.

Authors:  D S McPheeters; P Fabrizio; J Abelson
Journal:  Genes Dev       Date:  1989-12       Impact factor: 11.361

5.  Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae.

Authors:  S W Stevens; I Barta; H Y Ge; R E Moore; M K Young; T D Lee; J Abelson
Journal:  RNA       Date:  2001-11       Impact factor: 4.942

6.  Suppressors of a cold-sensitive mutation in yeast U4 RNA define five domains in the splicing factor Prp8 that influence spliceosome activation.

Authors:  A N Kuhn; D A Brow
Journal:  Genetics       Date:  2000-08       Impact factor: 4.562

7.  In vitro assembly of yeast U6 snRNP: a functional assay.

Authors:  P Fabrizio; D S McPheeters; J Abelson
Journal:  Genes Dev       Date:  1989-12       Impact factor: 11.361

8.  Unexpected flexibility in an evolutionarily conserved protein-RNA interaction: genetic analysis of the Sm binding site.

Authors:  M H Jones; C Guthrie
Journal:  EMBO J       Date:  1990-08       Impact factor: 11.598

9.  Expression of the essential mRNA export factor Yra1p is autoregulated by a splicing-dependent mechanism.

Authors:  Pascal J Preker; Karen S Kim; Christine Guthrie
Journal:  RNA       Date:  2002-08       Impact factor: 4.942

10.  Roles of PRP8 protein in the assembly of splicing complexes.

Authors:  J D Brown; J D Beggs
Journal:  EMBO J       Date:  1992-10       Impact factor: 11.598

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  24 in total

1.  In vitro reconstitution of yeast splicing with U4 snRNA reveals multiple roles for the 3' stem-loop.

Authors:  Amy J Hayduk; Martha R Stark; Stephen D Rader
Journal:  RNA       Date:  2012-03-12       Impact factor: 4.942

2.  The EF-G-like GTPase Snu114p regulates spliceosome dynamics mediated by Brr2p, a DExD/H box ATPase.

Authors:  Eliza C Small; Stephanie R Leggett; Adrienne A Winans; Jonathan P Staley
Journal:  Mol Cell       Date:  2006-08-04       Impact factor: 17.970

3.  Visualizing the splicing of single pre-mRNA molecules in whole cell extract.

Authors:  Daniel J Crawford; Aaron A Hoskins; Larry J Friedman; Jeff Gelles; Melissa J Moore
Journal:  RNA       Date:  2007-11-19       Impact factor: 4.942

4.  Mutations in the U5 snRNA result in altered splicing of subsets of pre-mRNAs and reduced stability of Prp8.

Authors:  Christopher J Kershaw; J David Barrass; Jean D Beggs; Raymond T O'Keefe
Journal:  RNA       Date:  2009-05-15       Impact factor: 4.942

5.  Structural and functional characterization of the N terminus of Schizosaccharomyces pombe Cwf10.

Authors:  S Brent Livesay; Scott E Collier; Danny A Bitton; Jürg Bähler; Melanie D Ohi
Journal:  Eukaryot Cell       Date:  2013-09-06

6.  Crystal structure of the C-terminal domain of splicing factor Prp8 carrying retinitis pigmentosa mutants.

Authors:  Lingdi Zhang; Jingping Shen; Michael T Guarnieri; Annie Heroux; Kui Yang; Rui Zhao
Journal:  Protein Sci       Date:  2007-05-01       Impact factor: 6.725

7.  Analysis of synthetic lethality reveals genetic interactions between the GTPase Snu114p and snRNAs in the catalytic core of the Saccharomyces cerevisiae spliceosome.

Authors:  Lily Novak Frazer; Simon C Lovell; Raymond T O'Keefe
Journal:  Genetics       Date:  2009-07-20       Impact factor: 4.562

8.  Comparative genomics RNAi screen identifies Eftud2 as a novel regulator of innate immunity.

Authors:  Lesly De Arras; Rebecca Laws; Sonia M Leach; Kyle Pontis; Jonathan H Freedman; David A Schwartz; Scott Alper
Journal:  Genetics       Date:  2013-12-20       Impact factor: 4.562

9.  Structural evidence for consecutive Hel308-like modules in the spliceosomal ATPase Brr2.

Authors:  Lingdi Zhang; Tao Xu; Corina Maeder; Laura-Oana Bud; James Shanks; Jay Nix; Christine Guthrie; Jeffrey A Pleiss; Rui Zhao
Journal:  Nat Struct Mol Biol       Date:  2009-06-14       Impact factor: 15.369

10.  Acetylation by the transcriptional coactivator Gcn5 plays a novel role in co-transcriptional spliceosome assembly.

Authors:  Felizza Q Gunderson; Tracy L Johnson
Journal:  PLoS Genet       Date:  2009-10-16       Impact factor: 5.917

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