Literature DB >> 16540482

Arabidopsis UPF1 RNA helicase for nonsense-mediated mRNA decay is involved in seed size control and is essential for growth.

Masato Yoine1, Terumi Nishii, Kenzo Nakamura.   

Abstract

UPF1 RNA helicase plays a central role in nonsense-mediated mRNA decay (NMD), which specifically recognizes aberrant mRNAs containing premature termination codons and targets them for degradation. Although NMD factors are highly conserved among eukaryotes, little is known about the role of NMD in plant growth and development. The lba1 mutant of Arabidopsis thaliana with a Gly(851)-->Glu missense mutation in AtUPF1 yielded seeds that were on average 22% longer in the long axis and 35% heavier than the wild-type Col seeds. Expression of the wild-type AtUPF1 in this mutant reduced the seeds to a normal size. During early stages of seed development, globular to torpedo stages of the embryos were contained within seed sacs that were larger in lba1 than in Col. Furthermore, the distance between seeds in siliques was greater in lba1 than in Col, suggesting that the lba1 mutation may affect ovule development. Self-pollinated atupf1-3(+/-) plants heterozygous for AtUPF1 disrupted by T-DNA insertion developed atupf1-3(-/-) seeds with a size and shape similar to those of Col seeds. However, the atupf1-3(-/-) seedlings stopped growing after radicle emergence from the seed coat, and this seedling lethality was rescued by expressing the wild-type AtUPF1. These results suggest that the lba1 mutation in AtUPF1 maternally affects seed development and that AtUPF1 is essential for seedling growth.

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Year:  2006        PMID: 16540482     DOI: 10.1093/pcp/pcj035

Source DB:  PubMed          Journal:  Plant Cell Physiol        ISSN: 0032-0781            Impact factor:   4.927


  41 in total

Review 1.  Processing bodies and plant development.

Authors:  Jun Xu; Nam-Hai Chua
Journal:  Curr Opin Plant Biol       Date:  2010-11-11       Impact factor: 7.834

Review 2.  NMD mechanism and the functions of Upf proteins in plant.

Authors:  Yiming Dai; Wenli Li; Lijia An
Journal:  Plant Cell Rep       Date:  2015-09-23       Impact factor: 4.570

3.  Nonsense-mediated mRNA decay (NMD) mechanisms.

Authors:  Saverio Brogna; Jikai Wen
Journal:  Nat Struct Mol Biol       Date:  2009-02       Impact factor: 15.369

Review 4.  Nonsense-mediated mRNA decay in human cells: mechanistic insights, functions beyond quality control and the double-life of NMD factors.

Authors:  Pamela Nicholson; Hasmik Yepiskoposyan; Stefanie Metze; Rodolfo Zamudio Orozco; Nicole Kleinschmidt; Oliver Mühlemann
Journal:  Cell Mol Life Sci       Date:  2009-10-27       Impact factor: 9.261

5.  Functional analysis of the grapevine paralogs of the SMG7 NMD factor using a heterolog VIGS-based gene depletion-complementation system.

Authors:  Anna Hangyáné Benkovics; Tünde Nyikó; Zsuzsanna Mérai; Dániel Silhavy; György Dénes Bisztray
Journal:  Plant Mol Biol       Date:  2011-01-14       Impact factor: 4.076

6.  Transcriptome-wide analysis of uncapped mRNAs in Arabidopsis reveals regulation of mRNA degradation.

Authors:  Yuling Jiao; José Luis Riechmann; Elliot M Meyerowitz
Journal:  Plant Cell       Date:  2008-10-24       Impact factor: 11.277

7.  Multiple Nonsense-Mediated mRNA Processes Require Smg5 in Drosophila.

Authors:  Jonathan O Nelson; Dominique Förster; Kimberly A Frizzell; Stefan Luschnig; Mark M Metzstein
Journal:  Genetics       Date:  2018-06-14       Impact factor: 4.562

8.  BnaC9.SMG7b Functions as a Positive Regulator of the Number of Seeds per Silique in Brassica napus by Regulating the Formation of Functional Female Gametophytes.

Authors:  Shipeng Li; Lei Chen; Liwu Zhang; Xi Li; Ying Liu; Zhikun Wu; Faming Dong; Lili Wan; Kede Liu; Dengfeng Hong; Guangsheng Yang
Journal:  Plant Physiol       Date:  2015-10-22       Impact factor: 8.340

9.  Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis.

Authors:  Yukio Kurihara; Akihiro Matsui; Kousuke Hanada; Makiko Kawashima; Junko Ishida; Taeko Morosawa; Maho Tanaka; Eli Kaminuma; Yoshiki Mochizuki; Akihiro Matsushima; Tetsuro Toyoda; Kazuo Shinozaki; Motoaki Seki
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-30       Impact factor: 11.205

10.  Functional characterization of Upf1 targets in Schizosaccharomyces pombe.

Authors:  Ana M Matia-González; Ayesha Hasan; Gøril H Moe; Juan Mata; Miguel A Rodríguez-Gabriel
Journal:  RNA Biol       Date:  2013-04-16       Impact factor: 4.652

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