Literature DB >> 16539424

Adenine tautomers: relative stabilities, ionization energies, and mismatch with cytosine.

C Fonseca Guerra1, F M Bickelhaupt, S Saha, F Wang.   

Abstract

In this study, we have investigated 12 tautomers of the DNA base adenine at the BP86/TZ2P and BP86/QZ4P levels of density functional theory. The vertical and adiabatic ionization energies of all tautomers were determined as the difference in energy between the radical cation and the corresponding neutral system. Furthermore, an evaluation is made for the eigenvalue spectra calculated with the SAOP functional, which is shown to lead to substantial improvements for orbital energies compared to BP86. We have also explored the correlations between the Kohn-Sham orbitals of the different tautomers at the BP86/QZ4P and SAOP/QZ4P levels. Finally, we discuss implications of the existence of the tautomeric forms of adenine for the DNA replication.

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Year:  2006        PMID: 16539424     DOI: 10.1021/jp057275r

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  12 in total

Review 1.  Ribonucleotides.

Authors:  John D Sutherland
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-03-10       Impact factor: 10.005

2.  Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis.

Authors:  Weina Wang; Homme W Hellinga; Lorena S Beese
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-17       Impact factor: 11.205

3.  The exocyclic amino group of adenine in PtII and PdII complexes: a critical comparison of the X-ray crystallographic structural data and gas phase calculations.

Authors:  Radu Silaghi-Dumitrescu; Béla Mihály; Timea Mihály; Amr A A Attia; Pablo J Sanz Miguel; Bernhard Lippert
Journal:  J Biol Inorg Chem       Date:  2017-03-17       Impact factor: 3.358

4.  Geometric consequences of electron delocalization for adenine tautomers in aqueous solution.

Authors:  Ewa D Raczyńska; Mariusz Makowski
Journal:  J Mol Model       Date:  2014-05-15       Impact factor: 1.810

5.  Quantum chemical investigations of AlN-doped C60 for use as a nano-biosensor in detection of mispairing between DNA bases.

Authors:  Shamoon Ahmad Siddiqui; Nadir Bouarissa; Tabish Rasheed; A Al-Hajry
Journal:  J Biosci       Date:  2014-12       Impact factor: 1.826

6.  DPT tautomerization of the long A∙A Watson-Crick base pair formed by the amino and imino tautomers of adenine: combined QM and QTAIM investigation.

Authors:  Ol'ha O Brovarets'; Roman O Zhurakivsky; Dmytro M Hovorun
Journal:  J Mol Model       Date:  2013-05-29       Impact factor: 1.810

7.  Accurate micro- and macro- gas phase basicities of hydroxyl-radical-modified pyrimidines estimated by advanced quantum chemistry methods.

Authors:  Piotr Cysewski; Katarzyna Kozłowska; Beata Szefler
Journal:  J Mol Model       Date:  2008-12-17       Impact factor: 1.810

Review 8.  Increasing occurrences and functional roles for high energy purine-pyrimidine base-pairs in nucleic acids.

Authors:  Isaac Kimsey; Hashim M Al-Hashimi
Journal:  Curr Opin Struct Biol       Date:  2014-01-09       Impact factor: 6.809

9.  The structure of an E. coli tRNAfMet A1-U72 variant shows an unusual conformation of the A1-U72 base pair.

Authors:  Auriane Monestier; Alexey Aleksandrov; Pierre-Damien Coureux; Michel Panvert; Yves Mechulam; Emmanuelle Schmitt
Journal:  RNA       Date:  2017-01-31       Impact factor: 4.942

10.  Mutual Relations between Substituent Effect, Hydrogen Bonding, and Aromaticity in Adenine-Uracil and Adenine-Adenine Base Pairs.

Authors:  Paweł A Wieczorkiewicz; Halina Szatylowicz; Tadeusz M Krygowski
Journal:  Molecules       Date:  2020-08-13       Impact factor: 4.411

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