Literature DB >> 16535760

A simple, efficient method for the separation of humic substances and DNA from environmental samples.

C R Jackson, J P Harper, D Willoughby, E E Roden, P F Churchill.   

Abstract

Three different gels (Sepharose 4B, Sephadex G-200, and Sephadex G-50) were evaluated as a means of removing humic contaminants from DNA extracts of environmental samples. Sepharose 4B gave superior separation of DNA from humics, and DNA purified in this way showed consistently greater amplification than DNA purified by the other materials.

Entities:  

Year:  1997        PMID: 16535760      PMCID: PMC1389316          DOI: 10.1128/aem.63.12.4993-4995.1997

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  18 in total

1.  DNA Probe Method for the Detection of Specific Microorganisms in the Soil Bacterial Community.

Authors:  William E Holben; Janet K Jansson; Barry K Chelm; James M Tiedje
Journal:  Appl Environ Microbiol       Date:  1988-03       Impact factor: 4.792

2.  Detection of low numbers of bacterial cells in soils and sediments by polymerase chain reaction.

Authors:  Y L Tsai; B H Olson
Journal:  Appl Environ Microbiol       Date:  1992-02       Impact factor: 4.792

3.  'Touchdown' PCR to circumvent spurious priming during gene amplification.

Authors:  R H Don; P T Cox; B J Wainwright; K Baker; J S Mattick
Journal:  Nucleic Acids Res       Date:  1991-07-25       Impact factor: 16.971

4.  Direct extraction and purification of rRNA for ecological studies.

Authors:  M A Moran; V L Torsvik; T Torsvik; R E Hodson
Journal:  Appl Environ Microbiol       Date:  1993-03       Impact factor: 4.792

5.  Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment.

Authors:  S M Barns; R E Fundyga; M W Jeffries; N R Pace
Journal:  Proc Natl Acad Sci U S A       Date:  1994-03-01       Impact factor: 11.205

6.  Automated polymerase chain reaction in capillary tubes with hot air.

Authors:  C T Wittwer; G C Fillmore; D R Hillyard
Journal:  Nucleic Acids Res       Date:  1989-06-12       Impact factor: 16.971

7.  DNA amplification to enhance detection of genetically engineered bacteria in environmental samples.

Authors:  R J Steffan; R M Atlas
Journal:  Appl Environ Microbiol       Date:  1988-09       Impact factor: 4.792

8.  Molecular microbial diversity of an agricultural soil in Wisconsin.

Authors:  J Borneman; P W Skroch; K M O'Sullivan; J A Palus; N G Rumjanek; J L Jansen; J Nienhuis; E W Triplett
Journal:  Appl Environ Microbiol       Date:  1996-06       Impact factor: 4.792

9.  Rapid method for separation of bacterial DNA from humic substances in sediments for polymerase chain reaction.

Authors:  Y L Tsai; B H Olson
Journal:  Appl Environ Microbiol       Date:  1992-07       Impact factor: 4.792

10.  Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments.

Authors:  G A Kowalchuk; J R Stephen; W De Boer; J I Prosser; T M Embley; J W Woldendorp
Journal:  Appl Environ Microbiol       Date:  1997-04       Impact factor: 4.792

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  21 in total

1.  Composition of soil microbial communities enriched on a mixture of aromatic hydrocarbons.

Authors:  E A Greene; J G Kay; K Jaber; L G Stehmeier; G Voordouw
Journal:  Appl Environ Microbiol       Date:  2000-12       Impact factor: 4.792

2.  Comparison of subsurface and surface soil bacterial communities in California grassland as assessed by terminal restriction fragment length polymorphisms of PCR-amplified 16S rRNA genes.

Authors:  M G LaMontagne; J P Schimel; P A Holden
Journal:  Microb Ecol       Date:  2003-08       Impact factor: 4.552

3.  Comparison of different primer sets for use in automated ribosomal intergenic spacer analysis of complex bacterial communities.

Authors:  Massimiliano Cardinale; Lorenzo Brusetti; Paola Quatrini; Sara Borin; Anna Maria Puglia; Aurora Rizzi; Elisabetta Zanardini; Claudia Sorlini; Cesare Corselli; Daniele Daffonchio
Journal:  Appl Environ Microbiol       Date:  2004-10       Impact factor: 4.792

4.  Microbial community shifts influence patterns in tropical forest nitrogen fixation.

Authors:  Sasha C Reed; Alan R Townsend; Cory C Cleveland; Diana R Nemergut
Journal:  Oecologia       Date:  2010-05-09       Impact factor: 3.225

5.  Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays.

Authors:  Noah Fierer; Jason A Jackson; Rytas Vilgalys; Robert B Jackson
Journal:  Appl Environ Microbiol       Date:  2005-07       Impact factor: 4.792

6.  Microbial community succession in an unvegetated, recently deglaciated soil.

Authors:  Diana R Nemergut; Suzanne P Anderson; Cory C Cleveland; Andrew P Martin; Amy E Miller; Anton Seimon; Steven K Schmidt
Journal:  Microb Ecol       Date:  2006-12-22       Impact factor: 4.552

7.  The diversity and biogeography of soil bacterial communities.

Authors:  Noah Fierer; Robert B Jackson
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-09       Impact factor: 11.205

8.  Fumarole-supported islands of biodiversity within a hyperarid, high-elevation landscape on Socompa Volcano, Puna de Atacama, Andes.

Authors:  Elizabeth K Costello; Stephan R P Halloy; Sasha C Reed; Preston Sowell; Steven K Schmidt
Journal:  Appl Environ Microbiol       Date:  2008-12-12       Impact factor: 4.792

9.  Application of isothermal helicase-dependent amplification with a disposable detection device in a simple sensitive stool test for toxigenic Clostridium difficile.

Authors:  Wing Huen A Chow; Cindy McCloskey; Yanhong Tong; Lin Hu; Qimin You; Ciarán P Kelly; Huimin Kong; Yi-Wei Tang; Wen Tang
Journal:  J Mol Diagn       Date:  2008-07-31       Impact factor: 5.568

10.  Refined NrfA phylogeny improves PCR-based nrfA gene detection.

Authors:  Allana Welsh; Joanne C Chee-Sanford; Lynn M Connor; Frank E Löffler; Robert A Sanford
Journal:  Appl Environ Microbiol       Date:  2014-01-24       Impact factor: 4.792

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