Literature DB >> 16534621

Phylogenetic analysis of Glomeromycota by partial LSU rDNA sequences.

Gladstone Alves da Silva1, Erica Lumini2, Leonor Costa Maia1, Paola Bonfante2, Valeria Bianciotto2.   

Abstract

We analyzed the large subunit ribosomal RNA (rRNA) gene [LSU ribosomal DNA (rDNA)] as a phylogenetic marker for arbuscular mycorrhizal (AM) fungal taxonomy. Partial LSU rDNA sequences were obtained from ten AM fungal isolates, comprising seven species, with two new primers designed for Glomeromycota LSU rDNA. The sequences, together with 58 sequences available from the databases, represented 31 AM fungal species. Neighbor joining and parsimony analyses were performed with the aim of evaluating the potential of the LSU rDNA for phylogenetic resolution. The resulting trees indicated that Archaeosporaceae are a basal group in Glomeromycota, Acaulosporaceae and Gigasporaceae belong to the same clade, while Glomeraceae are polyphyletic. The results support data obtained with the small subunit (SSU) rRNA gene, demonstrating that the LSU rRNA gene is a useful molecular marker for clarifying taxonomic and phylogenetic relationships in Glomeromycota.

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Year:  2006        PMID： 16534621     DOI： 10.1007/s00572-005-0030-9

Source DB:  PubMed          Journal:  Mycorrhiza        ISSN： 0940-6360            Impact factor:   3.387


  10 in total

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Journal:  Mol Phylogenet Evol       Date:  2000-02       Impact factor: 4.286

2.  Glomus, the largest genus of the arbuscular mycorrhizal fungi (Glomales), is nonmonophyletic.

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Journal:  Mol Phylogenet Evol       Date:  2001-11       Impact factor: 4.286

3.  Community structure of arbuscular mycorrhizal fungi in undisturbed vegetation revealed by analyses of LSU rDNA sequences.

Authors:  Søren Rosendahl; Eva H Stukenbrock
Journal:  Mol Ecol       Date:  2004-10       Impact factor: 6.185

4.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

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Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

5.  A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences.

Authors:  M Kimura
Journal:  J Mol Evol       Date:  1980-12       Impact factor: 2.395

6.  Geosiphon pyriforme, a fungus forming endocytobiosis with Nostoc (cyanobacteria), is an ancestral member of the Glomales: evidence by SSU rRNA analysis.

Authors:  H Gehrig; A Schüssler; M Kluge
Journal:  J Mol Evol       Date:  1996-07       Impact factor: 2.395

7.  Congruence of fatty acid methyl ester profiles and morphological characters of arbuscular mycorrhizal fungi in Gigasporaceae.

Authors:  S P Bentivenga; J B Morton
Journal:  Proc Natl Acad Sci U S A       Date:  1996-05-28       Impact factor: 11.205

8.  Gerdemannia gen. nov., a genus separated from Glomus, and Gerdemanniaceae fam. nov., a new family in the Glomeromycota.

Authors:  Christopher Walker; Janusz Błaszkowski; Daniel Schwarzott; Arthur Schüssler
Journal:  Mycol Res       Date:  2004-06

9.  Phylogeny of the Glomerales and Diversisporales (fungi: Glomeromycota) from actin and elongation factor 1-alpha sequences.

Authors:  Thorunn Helgason; Irene J Watson; J Peter W Young
Journal:  FEMS Microbiol Lett       Date:  2003-12-05       Impact factor: 2.742

10.  Fatty Acid methyl ester profiles for characterization of glomalean fungi and their endomycorrhizae.

Authors:  J H Graham; N C Hodge; J B Morton
Journal:  Appl Environ Microbiol       Date:  1995-01       Impact factor: 4.792
  10 in total
  7 in total

1.  Phosphate transporter genes as reliable gene markers for the identification and discrimination of arbuscular mycorrhizal fungi in the genus glomus.

Authors:  Serge Sokolski; Yolande Dalpé; Yves Piché
Journal:  Appl Environ Microbiol       Date:  2010-12-30       Impact factor: 4.792

2.  Phylogenetic analysis of the Glomeromycota by partial beta-tubulin gene sequences.

Authors:  Zola Msiska; Joseph B Morton
Journal:  Mycorrhiza       Date:  2008-12-23       Impact factor: 3.387

3.  Simultaneous specific in planta visualization of root-colonizing fungi using fluorescence in situ hybridization (FISH).

Authors:  Pál Vági; Dániel G Knapp; Annamária Kósa; Diána Seress; Áron N Horváth; Gábor M Kovács
Journal:  Mycorrhiza       Date:  2013-11-13       Impact factor: 3.387

4.  Mechanical soil disturbance as a determinant of arbuscular mycorrhizal fungal communities in semi-natural grassland.

Authors:  Tim Krone Schnoor; Ylva Lekberg; Søren Rosendahl; Pål Axel Olsson
Journal:  Mycorrhiza       Date:  2010-07-01       Impact factor: 3.387

5.  Molecular study of arbuscular mycorrhizal fungi colonizing the sporophyte of the eusporangiate rattlesnake fern (Botrychium virginianum, Ophioglossaceae).

Authors:  Gábor M Kovács; Tímea Balázs; Zsolt Pénzes
Journal:  Mycorrhiza       Date:  2007-06-14       Impact factor: 3.387

6.  Advances in Glomeromycota taxonomy and classification.

Authors:  Fritz Oehl; Ewald Sieverding; Javier Palenzuela; Kurt Ineichen; Gladstone Alves da Silva
Journal:  IMA Fungus       Date:  2011-11-18       Impact factor: 3.515

7.  The Mosaic Architecture of NRPS-PKS in the Arbuscular Mycorrhizal Fungus Gigaspora margarita Shows a Domain With Bacterial Signature.

Authors:  Francesco Venice; Alessandro Desirò; Gladstone Silva; Alessandra Salvioli; Paola Bonfante
Journal:  Front Microbiol       Date:  2020-11-26       Impact factor: 5.640
  7 in total

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