Literature DB >> 16533915

Biological water: Its vital role in macromolecular structure and function.

Florin Despa1.   

Abstract

Water in tissues and cells is confined by intervening cellular components and is subject to structural effects that are not present in its bulk counterpart. The structuring effects lower the dielectric susceptibility of water molecules and induce a "red shift" of their relaxation frequency. This is also a source of polarization fields that contribute to the effective interactions between macromolecules. The behavior of water molecules at hydrophilic sites is different from that at hydrophobic sites, and this dissimilar behavior promotes the anisotropy of the hydration shell of proteins. The anisotropy of the hydration shell is essential for the enzyme function, but it is also important in detecting denaturation of the protein (i.e., proteins expose their hydrophobic parts to water during unfolding). The most significant differences between biological and ordinary water will be presented along with how this information can be used to decipher patterns in dynamical behavior of biological water and to detect possible structural changes of the cellular components.

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Year:  2005        PMID: 16533915     DOI: 10.1196/annals.1363.023

Source DB:  PubMed          Journal:  Ann N Y Acad Sci        ISSN: 0077-8923            Impact factor:   5.691


  8 in total

1.  The origin of long-range attraction between hydrophobes in water.

Authors:  Florin Despa; R Stephen Berry
Journal:  Biophys J       Date:  2006-09-22       Impact factor: 4.033

2.  Conserved water molecules stabilize the Omega-loop in class A beta-lactamases.

Authors:  Fabian Bös; Jürgen Pleiss
Journal:  Antimicrob Agents Chemother       Date:  2008-01-14       Impact factor: 5.191

Review 3.  Cell wounding and repair in ventilator injured lungs.

Authors:  Richard A Oeckler; Rolf D Hubmayr
Journal:  Respir Physiol Neurobiol       Date:  2008-06-28       Impact factor: 1.931

4.  Hydration profiles of amyloidogenic molecular structures.

Authors:  Florin Despa; Ariel Fernández; L Ridgway Scott; R Stephen Berry
Journal:  J Biol Phys       Date:  2008-11-05       Impact factor: 1.365

5.  Multiple molecular dynamics simulations of TEM beta-lactamase: dynamics and water binding of the omega-loop.

Authors:  Fabian Bös; Jürgen Pleiss
Journal:  Biophys J       Date:  2009-11-04       Impact factor: 4.033

6.  Protein crowding affects hydration structure and dynamics.

Authors:  Ryuhei Harada; Yuji Sugita; Michael Feig
Journal:  J Am Chem Soc       Date:  2012-03-02       Impact factor: 15.419

7.  Hydration of sulphobetaine and tetra(ethylene glycol)-terminated self-assembled monolayers studied by sum frequency generation vibrational spectroscopy.

Authors:  M Jeanette Stein; Tobias Weidner; Keith McCrea; David G Castner; Buddy D Ratner
Journal:  J Phys Chem B       Date:  2009-08-20       Impact factor: 2.991

8.  Exclusion zone and heterogeneous water structure at ambient temperature.

Authors:  Seong G Hwang; Jun Ki Hong; Abha Sharma; Gerald H Pollack; GunWoong Bahng
Journal:  PLoS One       Date:  2018-04-18       Impact factor: 3.240

  8 in total

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