Literature DB >> 16533612

Systems biology of the human red blood cell.

Neema Jamshidi1, Bernhard Ø Palsson.   

Abstract

While the potential possibilities of systems biology appear to hold great promise, there are still many challenges to overcome, notably lack of complete characterization of biological components and their interactions and ways to measure these changes experimentally. The comparative simplicity of the human red cell sidesteps much of these challenges. Detailed models of human red cell metabolism have been developed for the last quarter century and continued development of these models has resulted in the ability to make functional phenotype predictions, in silico. Additionally, existing experimental proteomic and metabolomic technologies now provide the capability to perform individualized characterization of erythrocytes. While an experimentally testable systems biology model of most human cells is presently out of reach, it may be achievable with the red cell.

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Year:  2006        PMID: 16533612     DOI: 10.1016/j.bcmd.2006.01.006

Source DB:  PubMed          Journal:  Blood Cells Mol Dis        ISSN: 1079-9796            Impact factor:   3.039


  11 in total

1.  Algorithms for optimization of the transport system in living and artificial cells.

Authors:  A V Melkikh; M I Sutormina
Journal:  Syst Synth Biol       Date:  2011-06-17

2.  Mass action stoichiometric simulation models: incorporating kinetics and regulation into stoichiometric models.

Authors:  Neema Jamshidi; Bernhard Ø Palsson
Journal:  Biophys J       Date:  2010-01-20       Impact factor: 4.033

Review 3.  Clinical metabolomics: the next stage of clinical biochemistry.

Authors:  Angelo D'Alessandro; Bruno Giardina; Federica Gevi; Anna Maria Timperio; Lello Zolla
Journal:  Blood Transfus       Date:  2012-05       Impact factor: 3.443

4.  Metabolomics of ADSOL (AS-1) red blood cell storage.

Authors:  John D Roback; Cassandra D Josephson; Edmund K Waller; James L Newman; Sulaiman Karatela; Karan Uppal; Dean P Jones; James C Zimring; Larry J Dumont
Journal:  Transfus Med Rev       Date:  2014-02-05

5.  Antimalarial drug targets in Plasmodium falciparum predicted by stage-specific metabolic network analysis.

Authors:  Carola Huthmacher; Andreas Hoppe; Sascha Bulik; Hermann-Georg Holzhütter
Journal:  BMC Syst Biol       Date:  2010-08-31

6.  Optimal fluxes, reaction replaceability, and response to enzymopathies in the human red blood cell.

Authors:  A De Martino; D Granata; E Marinari; C Martelli; V Van Kerrebroeck
Journal:  J Biomed Biotechnol       Date:  2010-06-30

Review 7.  Computational approaches for understanding energy metabolism.

Authors:  Alexander A Shestov; Brandon Barker; Zhenglong Gu; Jason W Locasale
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2013-07-29

Review 8.  Metabolomics in transfusion medicine.

Authors:  Travis Nemkov; Kirk C Hansen; Larry J Dumont; Angelo D'Alessandro
Journal:  Transfusion       Date:  2015-12-12       Impact factor: 3.157

9.  Storing red blood cells with vitamin C and N-acetylcysteine prevents oxidative stress-related lesions: a metabolomics overview.

Authors:  Valeria Pallotta; Federica Gevi; Angelo D'alessandro; Lello Zolla
Journal:  Blood Transfus       Date:  2014-06-05       Impact factor: 3.443

10.  Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0.

Authors:  Laurent Heirendt; Sylvain Arreckx; Thomas Pfau; Sebastián N Mendoza; Anne Richelle; Almut Heinken; Hulda S Haraldsdóttir; Jacek Wachowiak; Sarah M Keating; Vanja Vlasov; Stefania Magnusdóttir; Chiam Yu Ng; German Preciat; Alise Žagare; Siu H J Chan; Maike K Aurich; Catherine M Clancy; Jennifer Modamio; John T Sauls; Alberto Noronha; Aarash Bordbar; Benjamin Cousins; Diana C El Assal; Luis V Valcarcel; Iñigo Apaolaza; Susan Ghaderi; Masoud Ahookhosh; Marouen Ben Guebila; Andrejs Kostromins; Nicolas Sompairac; Hoai M Le; Ding Ma; Yuekai Sun; Lin Wang; James T Yurkovich; Miguel A P Oliveira; Phan T Vuong; Lemmer P El Assal; Inna Kuperstein; Andrei Zinovyev; H Scott Hinton; William A Bryant; Francisco J Aragón Artacho; Francisco J Planes; Egils Stalidzans; Alejandro Maass; Santosh Vempala; Michael Hucka; Michael A Saunders; Costas D Maranas; Nathan E Lewis; Thomas Sauter; Bernhard Ø Palsson; Ines Thiele; Ronan M T Fleming
Journal:  Nat Protoc       Date:  2019-03       Impact factor: 13.491

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