Literature DB >> 16524841

Bioinformatic challenges for the next decade(s).

David Eisenberg1, Edward Marcotte, Andrew D McLachlan, Matteo Pellegrini.   

Abstract

The science of bioinformatics has developed in the wake of methods to determine the sequences of the informational macromolecules--DNAs, RNAs and proteins. But in a wider sense, the biological world depends in its every process on the transmission of information, and hence bioinformatics is the fundamental core of biology. We here give a consideration of some of the key problems of bioinformatics in the coming decade, and perhaps longer.

Mesh:

Year:  2006        PMID: 16524841      PMCID: PMC1609334          DOI: 10.1098/rstb.2005.1797

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  12 in total

1.  Measuring the dynamics of the proteome.

Authors:  E M Marcotte
Journal:  Genome Res       Date:  2001-02       Impact factor: 9.043

Review 2.  Translating the histone code.

Authors:  T Jenuwein; C D Allis
Journal:  Science       Date:  2001-08-10       Impact factor: 47.728

Review 3.  Genetic control by metabolite-binding riboswitches.

Authors:  Wade C Winkler; Ronald R Breaker
Journal:  Chembiochem       Date:  2003-10-06       Impact factor: 3.164

4.  Design of a novel globular protein fold with atomic-level accuracy.

Authors:  Brian Kuhlman; Gautam Dantas; Gregory C Ireton; Gabriele Varani; Barry L Stoddard; David Baker
Journal:  Science       Date:  2003-11-21       Impact factor: 47.728

5.  Genome-wide detection of tissue-specific alternative splicing in the human transcriptome.

Authors:  Qiang Xu; Barmak Modrek; Christopher Lee
Journal:  Nucleic Acids Res       Date:  2002-09-01       Impact factor: 16.971

6.  The disulphide bonds of insulin.

Authors:  A P RYLE; F SANGER; L F SMITH; R KITAI
Journal:  Biochem J       Date:  1955-08       Impact factor: 3.857

7.  Amyloid-like fibrils of ribonuclease A with three-dimensional domain-swapped and native-like structure.

Authors:  Shilpa Sambashivan; Yanshun Liu; Michael R Sawaya; Mari Gingery; David Eisenberg
Journal:  Nature       Date:  2005-09-08       Impact factor: 49.962

Review 8.  Riboswitches as versatile gene control elements.

Authors:  Brian J Tucker; Ronald R Breaker
Journal:  Curr Opin Struct Biol       Date:  2005-06       Impact factor: 6.809

9.  The arrangement of amino acids in proteins.

Authors:  F SANGER
Journal:  Adv Protein Chem       Date:  1952

10.  Comparative primate genomics.

Authors:  Wolfgang Enard; Svante Paabo
Journal:  Annu Rev Genomics Hum Genet       Date:  2004       Impact factor: 8.929

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  4 in total

1.  Introduction. Bioinformatics: from molecules to systems.

Authors:  David T Jones; Michael J E Sternberg; Janet M Thornton
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-03-29       Impact factor: 6.237

Review 2.  Establishment of computational biology in Greece and Cyprus: Past, present, and future.

Authors:  Anastasia Chasapi; Michalis Aivaliotis; Lefteris Angelis; Anastasios Chanalaris; Ioannis Iliopoulos; Ilias Kappas; Christos Karapiperis; Nikos C Kyrpides; Evangelos Pafilis; Eleftherios Panteris; Pantelis Topalis; George Tsiamis; Ioannis S Vizirianakis; Metaxia Vlassi; Vasilis J Promponas; Christos A Ouzounis
Journal:  PLoS Comput Biol       Date:  2019-12-19       Impact factor: 4.475

3.  Methodology for constructing problem definitions in bioinformatics.

Authors:  Amy M Hauth; Gertraud Burger
Journal:  Bioinform Biol Insights       Date:  2008-04-24

4.  Rise and demise of bioinformatics? Promise and progress.

Authors:  Christos A Ouzounis
Journal:  PLoS Comput Biol       Date:  2012-04-26       Impact factor: 4.475

  4 in total

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