Literature DB >> 15919195

Riboswitches as versatile gene control elements.

Brian J Tucker1, Ronald R Breaker.   

Abstract

Riboswitches are structured elements typically found in the 5' untranslated regions of mRNAs, where they regulate gene expression by binding to small metabolites. In all examples studied to date, these RNA control elements do not require the involvement of protein factors for metabolite binding. Riboswitches appear to be pervasive in eubacteria, suggesting that this form of regulation is an important mechanism by which metabolic genes are controlled. Recently discovered riboswitch classes have surprisingly complex mechanisms for regulating gene expression and new high-resolution structural models of these RNAs provide insight into the molecular details of metabolite recognition by natural RNA aptamers.

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Year:  2005        PMID: 15919195     DOI: 10.1016/j.sbi.2005.05.003

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  188 in total

1.  Protonation states of the key active site residues and structural dynamics of the glmS riboswitch as revealed by molecular dynamics.

Authors:  Pavel Banás; Nils G Walter; Jirí Sponer; Michal Otyepka
Journal:  J Phys Chem B       Date:  2010-07-08       Impact factor: 2.991

2.  Structure and stability of RNA/RNA kissing complex: with application to HIV dimerization initiation signal.

Authors:  Song Cao; Shi-Jie Chen
Journal:  RNA       Date:  2011-10-25       Impact factor: 4.942

3.  TurboKnot: rapid prediction of conserved RNA secondary structures including pseudoknots.

Authors:  Matthew G Seetin; David H Mathews
Journal:  Bioinformatics       Date:  2012-01-27       Impact factor: 6.937

Review 4.  Overview of regulatory strategies and molecular elements in metabolic engineering of bacteria.

Authors:  Tianwen Wang; Xingyuan Ma; Guocheng Du; Jian Chen
Journal:  Mol Biotechnol       Date:  2012-11       Impact factor: 2.695

5.  ProbKnot: fast prediction of RNA secondary structure including pseudoknots.

Authors:  Stanislav Bellaousov; David H Mathews
Journal:  RNA       Date:  2010-08-10       Impact factor: 4.942

Review 6.  Closing the circle: replicating RNA with RNA.

Authors:  Leslie K L Cheng; Peter J Unrau
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-06-16       Impact factor: 10.005

7.  Strategies for articulated multibody-based adaptive coarse grain simulation of RNA.

Authors:  Mohammad Poursina; Kishor D Bhalerao; Samuel C Flores; Kurt S Anderson; Alain Laederach
Journal:  Methods Enzymol       Date:  2011       Impact factor: 1.600

Review 8.  The rise of regulatory RNA.

Authors:  Kevin V Morris; John S Mattick
Journal:  Nat Rev Genet       Date:  2014-04-29       Impact factor: 53.242

9.  An accurately preorganized IRES RNA structure enables eIF4G capture for initiation of viral translation.

Authors:  Shunsuke Imai; Parimal Kumar; Christopher U T Hellen; Victoria M D'Souza; Gerhard Wagner
Journal:  Nat Struct Mol Biol       Date:  2016-08-15       Impact factor: 15.369

10.  One pathway can incorporate either adenine or dimethylbenzimidazole as an alpha-axial ligand of B12 cofactors in Salmonella enterica.

Authors:  Peter J Anderson; Jozsef Lango; Colleen Carkeet; Audrey Britten; Bernhard Kräutler; Bruce D Hammock; John R Roth
Journal:  J Bacteriol       Date:  2007-11-02       Impact factor: 3.490

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