Literature DB >> 16523687

[The time scale in poxvirus evolution].

I V Babkin, S N Shchelkunov.   

Abstract

Unlike vertebrates and RNA-containing viruses, the objective estimate of molecular clock for DNA-containing viruses was so far absent. An extended central conservative genomic region of orthopoxviruses (about 102 kbp) and the sequence of DNA polymerase gene (about 3 kbp) of the viruses belonging to various genera from the family Poxviridae were analyzed. During this analysis, the known dating of variola virus (VARV) transfer from West Africa to South America (XVI century) and our own data on close phylogenetic relations between the modem West African and South American VARV isolates were used. As a result of this work, it was calculated for the first time that the rate of mutation accumulation in these DNA-containing viruses amounted to 0.9-1.2 x 10(-6) substitutions per site per year. The poxviruses started separating from the ancestor virus to form the modem genera approximately 500 thousand years ago; the ancestor of the genus Orthopoxvirus separated about 300 thousand years ago; and its division into the modem studied species took place approximately 14 thousand years ago.

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Year:  2006        PMID: 16523687     DOI: 10.1134/s0026893306010043

Source DB:  PubMed          Journal:  Mol Biol (Mosk)        ISSN: 0026-8984


  20 in total

1.  Twin priming: a proposed mechanism for the creation of inversions in L1 retrotransposition.

Authors:  E M Ostertag; H H Kazazian
Journal:  Genome Res       Date:  2001-12       Impact factor: 9.043

2.  Translation of poliovirus RNA in vitro: changes in cleavage pattern and initiation sites by ribosomal salt wash.

Authors:  B A Brown; E Ehrenfeld
Journal:  Virology       Date:  1979-09       Impact factor: 3.616

3.  At least six nucleotides preceding the AUG initiator codon enhance translation in mammalian cells.

Authors:  M Kozak
Journal:  J Mol Biol       Date:  1987-08-20       Impact factor: 5.469

4.  An efficient mRNA-dependent translation system from reticulocyte lysates.

Authors:  H R Pelham; R J Jackson
Journal:  Eur J Biochem       Date:  1976-08-01

5.  Polypurine (A)-rich sequences promote cross-kingdom conservation of internal ribosome entry.

Authors:  Yuri L Dorokhov; Maxim V Skulachev; Peter A Ivanov; Svetlana D Zvereva; Lydia G Tjulkina; Andres Merits; Yuri Y Gleba; Thomas Hohn; Joseph G Atabekov
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-16       Impact factor: 11.205

Review 6.  Biology of mammalian L1 retrotransposons.

Authors:  E M Ostertag; H H Kazazian
Journal:  Annu Rev Genet       Date:  2001       Impact factor: 16.830

7.  Potassium salts influence the fidelity of mRNA translation initiation in rabbit reticulocyte lysates: unique features of encephalomyocarditis virus RNA translation.

Authors:  R J Jackson
Journal:  Biochim Biophys Acta       Date:  1991-03-26

8.  Cell type-specific expression of LINE-1 open reading frames 1 and 2 in fetal and adult human tissues.

Authors:  Süleyman Ergün; Christian Buschmann; Jochen Heukeshoven; Kristin Dammann; Frank Schnieders; Heidrun Lauke; Fariba Chalajour; Nerbil Kilic; Wolf H Strätling; Gerald G Schumann
Journal:  J Biol Chem       Date:  2004-03-31       Impact factor: 5.157

9.  Translation of hepatitis A virus RNA in vitro: aberrant internal initiations influenced by 5' noncoding region.

Authors:  X Y Jia; G Scheper; D Brown; W Updike; S Harmon; O Richards; D Summers; E Ehrenfeld
Journal:  Virology       Date:  1991-06       Impact factor: 3.616

10.  Cytoplasmic ribonucleoprotein complexes containing human LINE-1 protein and RNA.

Authors:  H Hohjoh; M F Singer
Journal:  EMBO J       Date:  1996-02-01       Impact factor: 11.598

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  8 in total

1.  An in-depth bioinformatic analysis of the novel recombinant lumpy skin disease virus strains: from unique patterns to established lineage.

Authors:  Alena Krotova; Olga Byadovskaya; Irina Shumilova; Antoinette van Schalkwyk; Alexander Sprygin
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Review 2.  The evolutionary biology of poxviruses.

Authors:  Austin L Hughes; Stephanie Irausquin; Robert Friedman
Journal:  Infect Genet Evol       Date:  2009-10-13       Impact factor: 3.342

3.  Orthopoxvirus genes that mediate disease virulence and host tropism.

Authors:  Sergei N Shchelkunov
Journal:  Adv Virol       Date:  2012-07-30

4.  An Update of Orthopoxvirus Molecular Evolution.

Authors:  Igor V Babkin; Irina N Babkina; Nina V Tikunova
Journal:  Viruses       Date:  2022-02-14       Impact factor: 5.048

5.  Protein kinase R reveals an evolutionary model for defeating viral mimicry.

Authors:  Nels C Elde; Stephanie J Child; Adam P Geballe; Harmit S Malik
Journal:  Nature       Date:  2008-11-30       Impact factor: 49.962

6.  The phylogenetics and ecology of the orthopoxviruses endemic to North America.

Authors:  Ginny L Emerson; Yu Li; Michael A Frace; Melissa A Olsen-Rasmussen; Marina L Khristova; Dhwani Govil; Scott A Sammons; Russell L Regnery; Kevin L Karem; Inger K Damon; Darin S Carroll
Journal:  PLoS One       Date:  2009-10-29       Impact factor: 3.240

Review 7.  The origin of the variola virus.

Authors:  Igor V Babkin; Irina N Babkina
Journal:  Viruses       Date:  2015-03-10       Impact factor: 5.048

Review 8.  Poxviruses in bats … so what?

Authors:  Kate S Baker; Pablo R Murcia
Journal:  Viruses       Date:  2014-04-03       Impact factor: 5.048

  8 in total

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