Literature DB >> 16519506

Microsecond time scale rotation measurements of single F1-ATPase molecules.

David Spetzler1, Justin York1, Douglas Daniel1, Raimund Fromme1, David Lowry1, Wayne Frasch1.   

Abstract

A novel method for detecting F(1)-ATPase rotation in a manner sufficiently sensitive to achieve acquisition rates with a time resolution of 2.5 micros (equivalent to 400,000 fps) is reported. This is sufficient for resolving the rate at which the gamma-subunit travels from one dwell state to another (transition time). Rotation is detected via a gold nanorod attached to the rotating gamma-subunit of an immobilized F(1)-ATPase. Variations in scattered light intensity allow precise measurement of changes in the angular position of the rod below the diffraction limit of light. Using this approach, the transition time of Escherichia coli F(1)-ATPase gamma-subunit rotation was determined to be 7.62 +/- 0.15 (standard deviation) rad/ms. The average rate-limiting dwell time between rotation events observed at the saturating substrate concentration was 8.03 ms, comparable to the observed Mg(2+)-ATPase k(cat) of 130 s(-)(1) (7.7 ms). Histograms of scattered light intensity from ATP-dependent nanorod rotation as a function of polarization angle allowed the determination of the nanorod orientation with respect to the axis of rotation and plane of polarization. This information allowed the drag coefficient to be determined, which implied that the instantaneous torque generated by F(1) was 63.3 +/- 2.9 pN nm. The high temporal resolution of rotation allowed the measurement of the instantaneous torque of F(1), resulting in direct implications for its rotational mechanism.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 16519506      PMCID: PMC4494661          DOI: 10.1021/bi052363n

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  24 in total

1.  Resolution of distinct rotational substeps by submillisecond kinetic analysis of F1-ATPase.

Authors:  R Yasuda; H Noji; M Yoshida; K Kinosita; H Itoh
Journal:  Nature       Date:  2001-04-19       Impact factor: 49.962

Review 2.  Real time imaging of rotating molecular machines.

Authors:  K Kinosita
Journal:  FASEB J       Date:  1999-12       Impact factor: 5.191

Review 3.  Inter-subunit rotation and elastic power transmission in F0F1-ATPase.

Authors:  W Junge; O Pänke; D A Cherepanov; K Gumbiowski; M Müller; S Engelbrecht
Journal:  FEBS Lett       Date:  2001-08-31       Impact factor: 4.124

Review 4.  ATP synthase--a marvellous rotary engine of the cell.

Authors:  M Yoshida; E Muneyuki; T Hisabori
Journal:  Nat Rev Mol Cell Biol       Date:  2001-09       Impact factor: 94.444

5.  Catalysis and rotation of F1 motor: cleavage of ATP at the catalytic site occurs in 1 ms before 40 degree substep rotation.

Authors:  Katsuya Shimabukuro; Ryohei Yasuda; Eiro Muneyuki; Kiyotaka Y Hara; Kazuhiko Kinosita; Masasuke Yoshida
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-01       Impact factor: 11.205

6.  Happy motoring with ATP synthase.

Authors:  Alan E Senior; Joachim Weber
Journal:  Nat Struct Mol Biol       Date:  2004-02       Impact factor: 15.369

Review 7.  ATP synthase: an electrochemical transducer with rotatory mechanics.

Authors:  W Junge; H Lill; S Engelbrecht
Journal:  Trends Biochem Sci       Date:  1997-11       Impact factor: 13.807

Review 8.  [World smallest motor, ATP synthase].

Authors:  M Yoshida; H Noji; E Muneyuki
Journal:  Tanpakushitsu Kakusan Koso       Date:  1997-07

9.  F-ATPase: specific observation of the rotating c subunit oligomer of EF(o)EF(1).

Authors:  O Pänke; K Gumbiowski; W Junge; S Engelbrecht
Journal:  FEBS Lett       Date:  2000-04-21       Impact factor: 4.124

10.  Interactions among gamma R268, gamma Q269, and the beta subunit catch loop of Escherichia coli F1-ATPase are important for catalytic activity.

Authors:  Matthew D Greene; Wayne D Frasch
Journal:  J Biol Chem       Date:  2003-10-07       Impact factor: 5.157

View more
  45 in total

1.  Principal role of the arginine finger in rotary catalysis of F1-ATPase.

Authors:  Yoshihito Komoriya; Takayuki Ariga; Ryota Iino; Hiromi Imamura; Daichi Okuno; Hiroyuki Noji
Journal:  J Biol Chem       Date:  2012-03-08       Impact factor: 5.157

2.  Mechanical modulation of catalytic power on F1-ATPase.

Authors:  Rikiya Watanabe; Daichi Okuno; Shouichi Sakakihara; Katsuya Shimabukuro; Ryota Iino; Masasuke Yoshida; Hiroyuki Noji
Journal:  Nat Chem Biol       Date:  2011-11-20       Impact factor: 15.040

3.  Theoretical analysis of the F(1)-ATPase experimental data.

Authors:  Ruben Perez-Carrasco; J M Sancho
Journal:  Biophys J       Date:  2010-06-02       Impact factor: 4.033

Review 4.  Biological Nanomotors with a Revolution, Linear, or Rotation Motion Mechanism.

Authors:  Peixuan Guo; Hiroyuki Noji; Christopher M Yengo; Zhengyi Zhao; Ian Grainge
Journal:  Microbiol Mol Biol Rev       Date:  2016-01-27       Impact factor: 11.056

5.  Direct observation of stepped proteolipid ring rotation in E. coli F₀F₁-ATP synthase.

Authors:  Robert Ishmukhametov; Tassilo Hornung; David Spetzler; Wayne D Frasch
Journal:  EMBO J       Date:  2010-10-29       Impact factor: 11.598

6.  A programmable optical angle clamp for rotary molecular motors.

Authors:  Teuta Pilizota; Thomas Bilyard; Fan Bai; Masamitsu Futai; Hiroyuki Hosokawa; Richard M Berry
Journal:  Biophys J       Date:  2007-04-13       Impact factor: 4.033

7.  Efficient and verified simulation of a path ensemble for conformational change in a united-residue model of calmodulin.

Authors:  Bin W Zhang; David Jasnow; Daniel M Zuckerman
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-01       Impact factor: 11.205

Review 8.  Single-molecule biophysics: at the interface of biology, physics and chemistry.

Authors:  Ashok A Deniz; Samrat Mukhopadhyay; Edward A Lemke
Journal:  J R Soc Interface       Date:  2008-01-06       Impact factor: 4.118

9.  Following the Behavior of the Flagellar Rotary Motor Near Zero Load.

Authors:  J Yuan; H C Berg
Journal:  Exp Mech       Date:  2010-11       Impact factor: 2.808

10.  Single molecule optical measurements of orientation and rotations of biological macromolecules.

Authors:  Deborah Y Shroder; Lisa G Lippert; Yale E Goldman
Journal:  Methods Appl Fluoresc       Date:  2016-11-22       Impact factor: 3.009

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.