Literature DB >> 16512708

Multicentered valence electron effective potentials: a solution to the link atom problem for ground and excited electronic states.

Petr Slavícek1, Todd J Martínez.   

Abstract

We introduce a multicentered valence electron effective potential (MC-VEEP) description of functional groups which succeeds even in the context of excited electronic states. The MC-VEEP is formulated within the ansatz which is familiar for effective core potentials in quantum chemistry, and so can be easily incorporated in any quantum chemical calculation. By demanding that both occupied and virtual orbitals are described correctly on the MC-VEEP, we are able to ensure correct behavior even when the MC-VEEP borders an electronically excited region. However, the present formulation does require that the electrons represented by the MC-VEEP are primarily spectators and not directly participating in the electronic excitation. We point out the importance of separating the electrostatic and exchange-repulsion components of the MC-VEEP in order that interactions between the effective potential and other nuclei can be modeled correctly. We present a MC-VEEP for methyl radical with one active electron which is tested in several conjugated molecules. We discuss the use of the MC-VEEP as a solution to the "link atom" problem in hybrid quantum mechanical/molecular mechanical methods. We also discuss the limitations and further development of this approach.

Entities:  

Year:  2006        PMID: 16512708     DOI: 10.1063/1.2173992

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  9 in total

1.  LICHEM: A QM/MM program for simulations with multipolar and polarizable force fields.

Authors:  Eric G Kratz; Alice R Walker; Louis Lagardère; Filippo Lipparini; Jean-Philip Piquemal; G Andrés Cisneros
Journal:  J Comput Chem       Date:  2016-01-18       Impact factor: 3.376

2.  Design-atom approach for the quantum mechanical/molecular mechanical covalent boundary: a design-carbon atom with five valence electrons.

Authors:  Chuanyun Xiao; Yingkai Zhang
Journal:  J Chem Phys       Date:  2007-09-28       Impact factor: 3.488

Review 3.  Free energies of chemical reactions in solution and in enzymes with ab initio quantum mechanics/molecular mechanics methods.

Authors:  Hao Hu; Weitao Yang
Journal:  Annu Rev Phys Chem       Date:  2008       Impact factor: 12.703

4.  Revealing quantum mechanical effects in enzyme catalysis with large-scale electronic structure simulation.

Authors:  Zhongyue Yang; Rimsha Mehmood; Mengyi Wang; Helena W Qi; Adam H Steeves; Heather J Kulik
Journal:  React Chem Eng       Date:  2018-11-29       Impact factor: 4.239

5.  Large-scale QM/MM free energy simulations of enzyme catalysis reveal the influence of charge transfer.

Authors:  Heather J Kulik
Journal:  Phys Chem Chem Phys       Date:  2018-08-08       Impact factor: 3.676

6.  Pseudobond parameters for QM/MM studies involving nucleosides, nucleotides, and their analogs.

Authors:  Robin Chaudret; Jerry M Parks; Weitao Yang
Journal:  J Chem Phys       Date:  2013-01-28       Impact factor: 3.488

7.  Development and application of ab initio QM/MM methods for mechanistic simulation of reactions in solution and in enzymes.

Authors:  Hao Hu; Weitao Yang
Journal:  Theochem       Date:  2009-03-30

8.  How Large Should the QM Region Be in QM/MM Calculations? The Case of Catechol O-Methyltransferase.

Authors:  Heather J Kulik; Jianyu Zhang; Judith P Klinman; Todd J Martínez
Journal:  J Phys Chem B       Date:  2016-10-28       Impact factor: 2.991

9.  Probing the range of applicability of structure- and energy-adjusted QM/MM link bonds II: Optimized link bond parameters for density functional tight binding approaches.

Authors:  Hans Georg Gallmetzer; Thomas S Hofer
Journal:  J Comput Chem       Date:  2022-03-03       Impact factor: 3.672

  9 in total

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