Literature DB >> 16511327

Expression, purification, crystallization and preliminary diffraction studies of the mammalian DAG kinase homologue YegS from Escherichia coli.

M Amin Bakali1, Pär Nordlund, B Martin Hallberg.   

Abstract

yegS is a gene encoding a 32 kDa cytosolic protein with unknown function but with strong sequence homology to a family of structurally uncharacterized eukaryotic non-protein kinases: diacylglycerol kinases, sphingosine kinases and ceramide kinases. Here, the overexpression, crystallization and preliminary diffraction analysis of Escherichia coli YegS are reported. The crystals belong to space group P2(1), with unit-cell parameters a = 42.4, b = 166.1, c = 48.5 A, beta = 96.97 degrees. The presence of a dimer in the asymmetric unit was estimated to give a Matthews coefficient (VM) of 2.5 A3 Da(-1) and a solvent content of 50.8%(v/v). Single-wavelength diffraction data were collected to a resolution of 1.9 A using synchrotron radiation.

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Year:  2006        PMID: 16511327      PMCID: PMC2197167          DOI: 10.1107/S1744309106004799

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  8 in total

1.  Identification of in vitro folding conditions for procathepsin S and cathepsin S using fractional factorial screens.

Authors:  Dominique A Tobbell; Brian J Middleton; Stephanie Raines; Maurice R C Needham; Ian W F Taylor; John Y Beveridge; W Mark Abbott
Journal:  Protein Expr Purif       Date:  2002-03       Impact factor: 1.650

2.  Screening for soluble expression of recombinant proteins in a 96-well format.

Authors:  R K Knaust; P Nordlund
Journal:  Anal Biochem       Date:  2001-10-01       Impact factor: 3.365

Review 3.  Diacylglyceride kinases, sphingosine kinases and NAD kinases: distant relatives of 6-phosphofructokinases.

Authors:  Gilles Labesse; Dominique Douguet; Liliane Assairi; Anne Marie Gilles
Journal:  Trends Biochem Sci       Date:  2002-06       Impact factor: 13.807

4.  The CCP4 suite: programs for protein crystallography.

Authors: 
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

Review 5.  Functional implications of the diacylglycerol kinase family.

Authors:  Koaru Goto; Hisatake Kondo
Journal:  Adv Enzyme Regul       Date:  2004

6.  Macromolecular crystal annealing: overcoming increased mosaicity associated with cryocrystallography.

Authors:  J M Harp; D E Timm; G J Bunick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-07-01

7.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

8.  Site-directed mutagenesis of the active site of diacylglycerol kinase alpha: calcium and phosphatidylserine stimulate enzyme activity via distinct mechanisms.

Authors:  Takahiro Abe; Xiaolan Lu; Ying Jiang; Clark E Boccone; Shaomin Qian; Krishna M Vattem; Ronald C Wek; James P Walsh
Journal:  Biochem J       Date:  2003-11-01       Impact factor: 3.857

  8 in total
  3 in total

Review 1.  Targeting the sphingosine kinase/sphingosine 1-phosphate pathway in disease: review of sphingosine kinase inhibitors.

Authors:  K Alexa Orr Gandy; Lina M Obeid
Journal:  Biochim Biophys Acta       Date:  2012-07-16

2.  Expression and purification of human diacylglycerol kinase α from baculovirus-infected insect cells for structural studies.

Authors:  Daisuke Takahashi; Fumio Sakane
Journal:  PeerJ       Date:  2018-08-10       Impact factor: 2.984

3.  Bacterial expression strategies for several Sus scrofa diacylglycerol kinase alpha constructs: solubility challenges.

Authors:  Elizabeth J Petro; Daniel M Raben
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

  3 in total

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