Literature DB >> 16511300

Capillary crystallization and molecular-replacement solution of haemoglobin II from the clam Lucina pectinata.

José A Gavira1, Walleska de Jesus, Ana Camara-Artigas, Juan López-Garriga, Juan M García-Ruiz.   

Abstract

Haemoglobin II is one of three haemoglobins present in the cytoplasm of the Lucina pectinata mollusc that inhabits the Caribbean coast. Using HBII purified from its natural source, crystallization screening was performed using the counter-diffusion method with capillaries of 0.2 mm inner diameter. Crystals of HbII suitable for data collection and structure determination were grown in the presence of agarose at 0.1%(w/v) in order to improve their quality. The crystals belong to the tetragonal space group P4(2)2(1)2, with unit-cell parameters a = b = 73.92, c = 152.35 A, and diffracted X-rays to a resolution of better than 2.0 A. The asymmetric unit is a homodimer with a corresponding Matthews coefficient (VM) of 3.15 A3 Da(-1) and a solvent content of 61% by volume.

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Year:  2006        PMID: 16511300      PMCID: PMC2197196          DOI: 10.1107/S1744309106002648

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  15 in total

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2.  Counterdiffusion methods for macromolecular crystallization.

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Authors:  M A Doyle; J Vitali; J B Wittenberg; S N Vinogradov; D A Walz; B F Edwards; P D Martin
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6.  Crystallization of a complex of hemoglobin components II and III of the symbiont-harboring clam Lucina pectinata.

Authors:  N Kemling; D W Kraus; J D Hockenhull-Johnson; J B Wittenberg; S N Vinogradov; D A Walz; B F Edwards; P Martin
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3.  Two-step counterdiffusion protocol for the crystallization of haemoglobin II from Lucina pectinata in the pH range 4-9.

Authors:  Carlos A Nieves-Marrero; Carlos R Ruiz-Martínez; Rafael A Estremera-Andújar; Luis A González-Ramírez; Juan López-Garriga; José A Gavira
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4.  Structure and ligand selection of hemoglobin II from Lucina pectinata.

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8.  Characterization and Expression of the Lucina pectinata Oxygen and Sulfide Binding Hemoglobin Genes.

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  8 in total

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