Literature DB >> 16511244

Crystallization and X-ray diffraction analysis of human CLEC-2.

Aleksandra A Watson1, Christopher A O'Callaghan.   

Abstract

The human C-type lectin-like protein CLEC-2 has recently been shown to be expressed on the surface of platelets and to function as a receptor for the snake-venom protein rhodocytin. The C-type lectin-like domain (CTLD) of CLEC-2 was expressed in Escherichia coli, refolded and purified. Crystals of this recombinant CLEC-2 were grown by sitting-drop vapour diffusion using polyethylene glycol (PEG) 6000 as a precipitant. After optimization, crystals were grown which diffracted to 2.0 A using in-house radiation (lambda = 1.5418 A). These crystals belonged to the orthorhombic space group P2(1)2(1)2(1), with unit-cell parameters a = 35.407, b = 55.143, c = 56.078 A. The presence of one molecule per asymmetric unit is consistent with a crystal volume per unit weight (VM) of 1.82 A3 Da(-1) and a solvent content of 32.6%. These results suggest that crystals producing diffraction of this quality will be suitable for the structural determination of human CLEC-2.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 16511244      PMCID: PMC1978148          DOI: 10.1107/S1744309105037991

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  12 in total

1.  Molecular characterization of two novel C-type lectin-like receptors, one of which is selectively expressed in human dendritic cells.

Authors:  M Colonna; J Samaridis; L Angman
Journal:  Eur J Immunol       Date:  2000-02       Impact factor: 5.532

2.  Molecular competition for NKG2D: H60 and RAE1 compete unequally for NKG2D with dominance of H60.

Authors:  C A O'Callaghan; A Cerwenka; B E Willcox; L L Lanier; P J Bjorkman
Journal:  Immunity       Date:  2001-08       Impact factor: 31.745

3.  A novel cluster of lectin-like receptor genes expressed in monocytic, dendritic and endothelial cells maps close to the NK receptor genes in the human NK gene complex.

Authors:  Y Sobanov; A Bernreiter; S Derdak; D Mechtcheriakova; B Schweighofer; M Düchler; F Kalthoff; E Hofer
Journal:  Eur J Immunol       Date:  2001-12       Impact factor: 5.532

4.  Matthews coefficient probabilities: Improved estimates for unit cell contents of proteins, DNA, and protein-nucleic acid complex crystals.

Authors:  Katherine A Kantardjieff; Bernhard Rupp
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

5.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

6.  Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

7.  Molecular cloning and sequence analysis of aggretin, a collagen-like platelet aggregation inducer.

Authors:  C H Chung; L C Au; T F Huang
Journal:  Biochem Biophys Res Commun       Date:  1999-10-05       Impact factor: 3.575

8.  Aggretin, a heterodimeric C-type lectin from Calloselasma rhodostoma (Malayan pit viper), stimulates platelets by binding to α2β1 integrin and glycoprotein Ib, activating Syk and phospholipase Cγ 2, but does not involve the glycoprotein VI/Fc receptor γ chain collagen receptor.

Authors:  A Navdaev; J M Clemetson; J Polgar; B E Kehrel; M Glauner; E Magnenat; T N Wells; K J Clemetson
Journal:  J Biol Chem       Date:  2001-04-03       Impact factor: 5.157

9.  Aggretin, a novel platelet-aggregation inducer from snake (Calloselasma rhodostoma) venom, activates phospholipase C by acting as a glycoprotein Ia/IIa agonist.

Authors:  T F Huang; C Z Liu; S H Yang
Journal:  Biochem J       Date:  1995-08-01       Impact factor: 3.857

10.  A procedure for setting up high-throughput nanolitre crystallization experiments. Crystallization workflow for initial screening, automated storage, imaging and optimization.

Authors:  Thomas S Walter; Jonathan M Diprose; Chris J Mayo; Christian Siebold; Mike G Pickford; Lester Carter; Geoff C Sutton; Nick S Berrow; James Brown; Ian M Berry; Guillaume B E Stewart-Jones; Jonathan M Grimes; David K Stammers; Robert M Esnouf; E Yvonne Jones; Ray J Owens; David I Stuart; Karl Harlos
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-05-26
View more
  10 in total

1.  Structural analysis of bacteriophage-encoded peptidoglycan hydrolase domain KMV36C: crystallization and preliminary X-ray diffraction.

Authors:  Kristof Van Hecke; Yves Briers; Rita Derua; Etienne Waelkens; Rob Lavigne; Luc Van Meervelt
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-03-21

2.  Structural flexibility of the macrophage dengue virus receptor CLEC5A: implications for ligand binding and signaling.

Authors:  Aleksandra A Watson; Andrey A Lebedev; Benjamin A Hall; Angharad E Fenton-May; Alexei A Vagin; Wanwisa Dejnirattisai; James Felce; Juthathip Mongkolsapaya; Angelina S Palma; Yan Liu; Ten Feizi; Gavin R Screaton; Garib N Murshudov; Christopher A O'Callaghan
Journal:  J Biol Chem       Date:  2011-05-12       Impact factor: 5.157

Review 3.  Platelet "first responders" in wound response, cancer, and metastasis.

Authors:  David G Menter; Scott Kopetz; Ernest Hawk; Anil K Sood; Jonathan M Loree; Paolo Gresele; Kenneth V Honn
Journal:  Cancer Metastasis Rev       Date:  2017-06       Impact factor: 9.264

4.  Incorporation of podoplanin into HIV released from HEK-293T cells, but not PBMC, is required for efficient binding to the attachment factor CLEC-2.

Authors:  Chawaree Chaipan; Imke Steffen; Theodros Solomon Tsegaye; Stephanie Bertram; Ilona Glowacka; Yukinari Kato; Jan Schmökel; Jan Münch; Graham Simmons; Rita Gerardy-Schahn; Stefan Pöhlmann
Journal:  Retrovirology       Date:  2010-05-19       Impact factor: 4.602

5.  Renal cells activate the platelet receptor CLEC-2 through podoplanin.

Authors:  Charita M Christou; Andrew C Pearce; Aleksandra A Watson; Anita R Mistry; Alice Y Pollitt; Angharad E Fenton-May; Louise A Johnson; David G Jackson; Steve P Watson; Chris A O'Callaghan
Journal:  Biochem J       Date:  2008-04-01       Impact factor: 3.857

Review 6.  Platelets and cancer: a casual or causal relationship: revisited.

Authors:  David G Menter; Stephanie C Tucker; Scott Kopetz; Anil K Sood; John D Crissman; Kenneth V Honn
Journal:  Cancer Metastasis Rev       Date:  2014-03       Impact factor: 9.264

7.  Crystal structure of rhodocytin, a ligand for the platelet-activating receptor CLEC-2.

Authors:  Aleksandra A Watson; Johannes A Eble; Chris A O'Callaghan
Journal:  Protein Sci       Date:  2008-06-26       Impact factor: 6.725

8.  Molecular analysis of the interaction of the snake venom rhodocytin with the platelet receptor CLEC-2.

Authors:  Aleksandra A Watson; Christopher A O'Callaghan
Journal:  Toxins (Basel)       Date:  2011-08-10       Impact factor: 4.546

9.  A novel decarboxylating amidohydrolase involved in avoiding metabolic dead ends during cyanuric acid catabolism in Pseudomonas sp. strain ADP.

Authors:  Lygie Esquirol; Thomas S Peat; Matthew Wilding; Carol J Hartley; Janet Newman; Colin Scott
Journal:  PLoS One       Date:  2018-11-06       Impact factor: 3.240

Review 10.  Roles of Podoplanin in Malignant Progression of Tumor.

Authors:  Hiroyuki Suzuki; Mika K Kaneko; Yukinari Kato
Journal:  Cells       Date:  2022-02-07       Impact factor: 6.600

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.