Literature DB >> 16511238

Purification, crystallization and preliminary X-ray crystallographic study of the L-fuculose-1-phosphate aldolase (FucA) from Thermus thermophilus HB8.

Jeyaraman Jeyakanthan1, Junichiro Taka, Akihiro Kikuchi, Chizu Kuroishi, Katsuhide Yutani, Yoshitugu Shiro.   

Abstract

Fuculose phosphate aldolase catalyzes the reversible cleavage of L-fuculose-1-phosphate to dihydroxyacetone phosphate and L-lactaldehyde. The protein from Thermus thermophilus HB8 is a biological tetramer with a subunit molecular weight of 21 591 Da. Purified FucA has been crystallized using sitting-drop vapour-diffusion and microbatch techniques at 293 K. The crystals belong to space group P4, with unit-cell parameters a = b = 100.94, c = 45.87 A. The presence of a dimer of the enzyme in the asymmetric unit was estimated to give a Matthews coefficient (VM) of 2.7 A3 Da(-1) and a solvent content of 54.2%(v/v). Three-wavelength diffraction MAD data were collected to 2.3 A from zinc-containing crystals. Native diffraction data to 1.9 A resolution have been collected using synchrotron radiation at SPring-8.

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Year:  2005        PMID: 16511238      PMCID: PMC1978142          DOI: 10.1107/S1744309105036766

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  29 in total

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Authors:  Markus Kroemer; Georg E Schulz
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-04-26

2.  Pushing the boundaries of molecular replacement with maximum likelihood.

Authors:  R J Read
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-09-21

3.  Observation of covalent intermediates in an enzyme mechanism at atomic resolution.

Authors:  A Heine; G DeSantis; J G Luz; M Mitchell; C H Wong; I A Wilson
Journal:  Science       Date:  2001-10-12       Impact factor: 47.728

4.  EVOLUTION OF ALDOLASE.

Authors:  W J RUTTER
Journal:  Fed Proc       Date:  1964 Nov-Dec

5.  The metabolism of L-fucose. II. The enzymatic cleavage of L-fuculose 1-phosphate.

Authors:  M A GHALAMBOR; E C HEATH
Journal:  J Biol Chem       Date:  1962-08       Impact factor: 5.157

6.  Likelihood-enhanced fast rotation functions.

Authors:  Laurent C Storoni; Airlie J McCoy; Randy J Read
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-02-25

7.  Crystal structure of an archaeal class I aldolase and the evolution of (betaalpha)8 barrel proteins.

Authors:  Esben Lorentzen; Ehmke Pohl; Peter Zwart; Alexander Stark; Robert B Russell; Thomas Knura; Reinhard Hensel; Bettina Siebers
Journal:  J Biol Chem       Date:  2003-08-26       Impact factor: 5.157

8.  The crystal structure of Escherichia coli class II fructose-1, 6-bisphosphate aldolase in complex with phosphoglycolohydroxamate reveals details of mechanism and specificity.

Authors:  D R Hall; G A Leonard; C D Reed; C I Watt; A Berry; W N Hunter
Journal:  J Mol Biol       Date:  1999-03-26       Impact factor: 5.469

9.  Crystal structure of human muscle aldolase complexed with fructose 1,6-bisphosphate: mechanistic implications.

Authors:  A Dalby; Z Dauter; J A Littlechild
Journal:  Protein Sci       Date:  1999-02       Impact factor: 6.725

10.  The first crystal structure of archaeal aldolase. Unique tetrameric structure of 2-deoxy-d-ribose-5-phosphate aldolase from the hyperthermophilic archaea Aeropyrum pernix.

Authors:  Haruhiko Sakuraba; Hideaki Tsuge; Ikuko Shimoya; Ryushi Kawakami; Shuichiro Goda; Yutaka Kawarabayasi; Nobuhiko Katunuma; Hideo Ago; Masashi Miyano; Toshihisa Ohshima
Journal:  J Biol Chem       Date:  2003-01-15       Impact factor: 5.157

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  5 in total

1.  Crystal structure analysis of L-fuculose-1-phosphate aldolase from Thermus thermophilus HB8 and its catalytic action: as explained through in silico.

Authors:  L Karthik; M Nachiappan; D Velmurugan; J Jeyakanthan; K Gunasekaran
Journal:  J Struct Funct Genomics       Date:  2013-06-07

2.  Synthesis of rare sugars with L-fuculose-1-phosphate aldolase (FucA) from Thermus thermophilus HB8.

Authors:  Zijie Li; Li Cai; Qingsheng Qi; Thomas J Styslinger; Guohui Zhao; Peng George Wang
Journal:  Bioorg Med Chem Lett       Date:  2011-03-23       Impact factor: 2.823

3.  Crystal structure of fuculose aldolase from the Antarctic psychrophilic yeast Glaciozyma antarctica PI12.

Authors:  Nardiah Rizwana Jaafar; Dene Littler; Travis Beddoe; Jamie Rossjohn; Rosli Md Illias; Nor Muhammad Mahadi; Mukram Mohamed Mackeen; Abdul Munir Abdul Murad; Farah Diba Abu Bakar
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2016-10-27       Impact factor: 1.056

Review 4.  DHAP-dependent aldolases from (hyper)thermophiles: biochemistry and applications.

Authors:  Pierpaolo Falcicchio; Suzanne Wolterink-Van Loo; Maurice C R Franssen; John van der Oost
Journal:  Extremophiles       Date:  2013-10-29       Impact factor: 2.395

5.  Crystallization and preliminary X-ray crystallographic analysis of human Apaf-1-interacting protein.

Authors:  Wonchull Kang; Jin Kuk Yang
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-11-14
  5 in total

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