Literature DB >> 16511146

Crystallization and preliminary X-ray study of a family 10 alkali-thermostable xylanase from alkalophilic Bacillus sp. strain NG-27.

K Manikandan1, Amit Bhardwaj, Amit Ghosh, V S Reddy, S Ramakumar.   

Abstract

Xylanases (EC 3.2.1.8) catalyze the hydrolysis of beta-1,4-glycosidic linkages within xylan, a major hemicellulose component in the biosphere. The extracellular endoxylanase (XylnA) from the alkalophilic Bacillus sp. strain NG-27 belongs to family 10 of the glycoside hydrolases. It is active at 343 K and pH 8.4. Moreover, it has attractive features from the point of view of utilization in the paper pulp, animal feed and baking industries since it is an alkali-thermostable protein. In this study, XylnA was purified from the native host source and crystallized by the hanging-drop vapour-diffusion method. The crystals belong to the monoclinic space group C2, with unit-cell parameters a = 174.5, b = 54.7, c = 131.5 A, beta = 131.2 degrees, and diffract to better than 2.2 A resolution.

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Year:  2005        PMID: 16511146      PMCID: PMC1952343          DOI: 10.1107/S1744309105020518

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  17 in total

1.  Cloning, expression, and sequence analysis of the gene encoding the alkali-stable, thermostable endoxylanase from alkalophilic, mesophilic Bacillus sp. Strain NG-27.

Authors:  N Gupta; V S Reddy; S Maiti; A Ghosh
Journal:  Appl Environ Microbiol       Date:  2000-06       Impact factor: 4.792

2.  Structure of xylanase Xys1delta from Streptomyces halstedii.

Authors:  Albert Canals; M Cristina Vega; F Xavier Gomis-Rüth; Margarita Díaz; Ram óN I Santamaría R; Miquel Coll
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-07-23

Review 3.  Microbial hemicellulases.

Authors:  Dalia Shallom; Yuval Shoham
Journal:  Curr Opin Microbiol       Date:  2003-06       Impact factor: 7.934

4.  Coot: model-building tools for molecular graphics.

Authors:  Paul Emsley; Kevin Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

5.  Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

6.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

7.  Crystal structure of Streptomyces olivaceoviridis E-86 beta-xylanase containing xylan-binding domain.

Authors:  Z Fujimoto; A Kuno; S Kaneko; S Yoshida; H Kobayashi; I Kusakabe; H Mizuno
Journal:  J Mol Biol       Date:  2000-07-14       Impact factor: 5.469

8.  Structure determination of the extracellular xylanase from Geobacillus stearothermophilus by selenomethionyl MAD phasing.

Authors:  A Teplitsky; A Mechaly; V Stojanoff; G Sainz; G Golan; H Feinberg; R Gilboa; V Reiland; G Zolotnitsky; D Shallom; A Thompson; Y Shoham; G Shoham
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-04-21

9.  Structural and biochemical analysis of Cellvibrio japonicus xylanase 10C: how variation in substrate-binding cleft influences the catalytic profile of family GH-10 xylanases.

Authors:  Gavin Pell; Lóránd Szabo; Simon J Charnock; Hefang Xie; Tracey M Gloster; Gideon J Davies; Harry J Gilbert
Journal:  J Biol Chem       Date:  2003-12-11       Impact factor: 5.157

10.  Thermostable xylanase from Thermoascus aurantiacus at ultrahigh resolution (0.89 A) at 100 K and atomic resolution (1.11 A) at 293 K refined anisotropically to small-molecule accuracy.

Authors:  R Natesh; K Manikandan; P Bhanumoorthy; M A Viswamitra; S Ramakumar
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-12-19
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  4 in total

Review 1.  Thermostable enzymes as biocatalysts in the biofuel industry.

Authors:  Carl J Yeoman; Yejun Han; Dylan Dodd; Charles M Schroeder; Roderick I Mackie; Isaac K O Cann
Journal:  Adv Appl Microbiol       Date:  2010-03-06       Impact factor: 5.086

2.  Crystal structures of native and xylosaccharide-bound alkali thermostable xylanase from an alkalophilic Bacillus sp. NG-27: structural insights into alkalophilicity and implications for adaptation to polyextreme conditions.

Authors:  Karuppasamy Manikandan; Amit Bhardwaj; Naveen Gupta; Neratur K Lokanath; Amit Ghosh; Vanga Siva Reddy; Suryanarayanarao Ramakumar
Journal:  Protein Sci       Date:  2006-07-05       Impact factor: 6.725

3.  The critical role of N- and C-terminal contact in protein stability and folding of a family 10 xylanase under extreme conditions.

Authors:  Amit Bhardwaj; Sadhu Leelavathi; Sudeshna Mazumdar-Leighton; Amit Ghosh; Suryanarayanarao Ramakumar; Vanga S Reddy
Journal:  PLoS One       Date:  2010-06-28       Impact factor: 3.240

4.  The critical role of partially exposed N-terminal valine residue in stabilizing GH10 xylanase from Bacillus sp.NG-27 under poly-extreme conditions.

Authors:  Amit Bhardwaj; Amit Bharadwaj; Sadhu Leelavathi; Sudeshna Mazumdar-Leighton; Amit Ghosh; Suryanarayanarao Ramakumar; Vanga S Reddy
Journal:  PLoS One       Date:  2008-08-26       Impact factor: 3.240

  4 in total

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