Literature DB >> 16511141

Precipitation diagram and optimization of crystallization conditions at low ionic strength for deglycosylated dye-decolorizing peroxidase from a basidiomycete.

Shinya Saijo1, Takao Sato, Nobuo Tanaka, Atsushi Ichiyanagi, Yasushi Sugano, Makoto Shoda.   

Abstract

The growth of suitably sized protein crystals is essential for protein structure determination by X-ray crystallography. In general, crystals are grown using a trial-and-error method. However, these methods have been modified with the advent of microlitre dispensing-robot technology and of protocols that rapidly screen for crystal nucleation conditions. The use of one such automatic dispenser for mixing protein drops (1.3-2.0 microl in volume) of known concentration and pH with precipitating solutions (ejecting 2.0 microl droplets) containing salt is described here. The results of the experiments are relevant to a crystallization approach based on a two-step procedure: screening for the crystal nucleation step employing robotics followed by optimization of the crystallization conditions using incomplete factorial experimental design. Large crystals have successfully been obtained using quantities as small as 3.52 mg protein.

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Year:  2005        PMID: 16511141      PMCID: PMC1952364          DOI: 10.1107/S1744309105019469

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  12 in total

1.  New developments of the IMPAX small-volume automated crystallization system.

Authors:  N E Chayen; P D Shaw Stewart; P Baldock
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-07-01

2.  A novel technique for containerless protein crystallization.

Authors:  N E Chayen
Journal:  Protein Eng       Date:  1996-10

Review 3.  Comparative studies of protein crystallization by vapour-diffusion and microbatch techniques.

Authors:  N E Chayen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-01-01

4.  The role of oil in macromolecular crystallization.

Authors:  N E Chayen
Journal:  Structure       Date:  1997-10-15       Impact factor: 5.006

5.  Solubility diagram of the Rhodobacter sphaeroides reaction center as a function of PEG concentration.

Authors:  J F Gaucher; M Riès-Kautt; F Reiss-Husson; A Ducruix
Journal:  FEBS Lett       Date:  1997-01-20       Impact factor: 4.124

6.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

7.  Incomplete factorial and response surface methods in experimental design: yield optimization of tRNA(Trp) from in vitro T7 RNA polymerase transcription.

Authors:  Y Yin; C W Carter
Journal:  Nucleic Acids Res       Date:  1996-04-01       Impact factor: 16.971

8.  Protein crystallization using incomplete factorial experiments.

Authors:  C W Carter; C W Carter
Journal:  J Biol Chem       Date:  1979-12-10       Impact factor: 5.157

9.  A unique dye-decolorizing peroxidase, DyP, from Thanatephorus cucumeris Dec 1: heterologous expression, crystallization and preliminary X-ray analysis.

Authors:  Takao Sato; Shusaku Hara; Takuro Matsui; Gen Sazaki; Shinya Saijo; Tadashi Ganbe; Nobuo Tanaka; Yasushi Sugano; Makoto Shoda
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-12-18

10.  How to measure and predict the molar absorption coefficient of a protein.

Authors:  C N Pace; F Vajdos; L Fee; G Grimsley; T Gray
Journal:  Protein Sci       Date:  1995-11       Impact factor: 6.725

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  2 in total

1.  Humidity control can compensate for the damage induced in protein crystals by alien solutions.

Authors:  C Abad-Zapatero; R Oliete; S Rodriguez-Puente; J Pous; L Martinelli; M E Johnson; A Guasch
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-09-29

2.  Expression, purification, crystallization and preliminary X-ray analysis of the Met244Ala variant of catalase-peroxidase (KatG) from the haloarchaeon Haloarcula marismortui.

Authors:  Tomomi Ten-I; Takashi Kumasaka; Wataru Higuchi; Satoru Tanaka; Katsuhiko Yoshimatsu; Taketomo Fujiwara; Takao Sato
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-10-24
  2 in total

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