Literature DB >> 16511107

Crystallization and preliminary X-ray analysis of molecular chaperone-like diol dehydratase-reactivating factor in ADP-bound and nucleotide-free forms.

Koichi Mori1, Naoki Hieda, Mamoru Yamanishi, Naoki Shibata, Tetsuo Toraya.   

Abstract

Adenosylcobalamin (coenzyme B12) dependent diol dehydratase (EC 4.2.1.28) catalyzes the conversion of 1,2-diols and glycerol to the corresponding aldehydes. It undergoes mechanism-based inactivation by glycerol. The diol dehydratase-reactivating factor (DDR) reactivates the inactivated holoenzymes in the presence of adenosylcobalamin, ATP and Mg2+ by mediating the release of a damaged cofactor. This molecular chaperone-like factor was overexpressed in Escherichia coli, purified and crystallized in the ADP-bound and nucleotide-free forms by the sandwich-drop vapour-diffusion method. The crystals of the ADP-bound form belong to the orthorhombic system, with space group P2(1)2(1)2(1) and unit-cell parameters a = 83.26, b = 84.60, c = 280.09 A, and diffract to 2.0 A. In the absence of nucleotide, DDR crystals were orthorhombic, with space group P2(1)2(1)2(1) and unit-cell parameters a = 81.92, b = 85.37, c = 296.99 A and diffract to 3.0 A. Crystals of both forms were suitable for structural analysis.

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Year:  2005        PMID: 16511107      PMCID: PMC1952328          DOI: 10.1107/S1744309105015733

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  20 in total

1.  Identification and expression of the genes encoding a reactivating factor for adenosylcobalamin-dependent glycerol dehydratase.

Authors:  T Tobimatsu; H Kajiura; M Yunoki; M Azuma; T Toraya
Journal:  J Bacteriol       Date:  1999-07       Impact factor: 3.490

2.  Structure of glycerol dehydratase reactivase: a new type of molecular chaperone.

Authors:  Der Ing Liao; Lisa Reiss; Ivan Turner; Garry Dotson
Journal:  Structure       Date:  2003-01       Impact factor: 5.006

3.  Purification and properties of dioldehydrase, and enzyme requiring a cobamide coenzyme.

Authors:  H A LEE; R H ABELES
Journal:  J Biol Chem       Date:  1963-07       Impact factor: 5.157

4.  Substrate specificity of coenzyme B12-dependent diol dehydrase: glycerol as both a good substrate and a potent inactivator.

Authors:  T Toraya; T Shirakashi; T Kosuga; S Fukui
Journal:  Biochem Biophys Res Commun       Date:  1976-03-22       Impact factor: 3.575

Review 5.  Radical catalysis in coenzyme B12-dependent isomerization (eliminating) reactions.

Authors:  Tetsuo Toraya
Journal:  Chem Rev       Date:  2003-06       Impact factor: 60.622

6.  Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

7.  Characterization and mechanism of action of a reactivating factor for adenosylcobalamin-dependent glycerol dehydratase.

Authors:  H Kajiura; K Mori; T Tobimatsu; T Toraya
Journal:  J Biol Chem       Date:  2001-07-24       Impact factor: 5.157

8.  Identification and expression of the genes and purification and characterization of the gene products involved in reactivation of coenzyme B12-dependent glycerol dehydratase of Citrobacter freundii.

Authors:  C Seifert; S Bowien; G Gottschalk; R Daniel
Journal:  Eur J Biochem       Date:  2001-04

9.  Mechanism of reactivation of coenzyme B12-dependent diol dehydratase by a molecular chaperone-like reactivating factor.

Authors:  K Mori; T Toraya
Journal:  Biochemistry       Date:  1999-10-05       Impact factor: 3.162

10.  Identification of a reactivating factor for adenosylcobalamin-dependent ethanolamine ammonia lyase.

Authors:  Koichi Mori; Reiko Bando; Naoki Hieda; Tetsuo Toraya
Journal:  J Bacteriol       Date:  2004-10       Impact factor: 3.490

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  1 in total

1.  Chemical probing provides insight into the native assembly state of a bacterial microcompartment.

Authors:  Daniel S Trettel; William Resager; Beatrix M Ueberheide; Conor C Jenkins; Wade C Winkler
Journal:  Structure       Date:  2022-02-24       Impact factor: 5.871

  1 in total

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