Literature DB >> 16511037

Structure of a high-resolution crystal form of human triosephosphate isomerase: improvement of crystals using the gel-tube method.

Takayoshi Kinoshita1, Riyo Maruki, Masaichi Warizaya, Hidenori Nakajima, Shintaro Nishimura.   

Abstract

Crystals of human triosephosphate isomerase with two crystal morphologies were obtained using the normal vapour-diffusion technique with identical crystallization conditions. One had a disordered plate shape and the crystals were hollow (crystal form 1). As a result, this form was very fragile, diffracted to 2.8 A resolution and had similar crystallographic parameters to those of the structure 1hti in the Protein Data Bank. The other had a fine needle shape (crystal form 2) and was formed more abundantly than crystal form 1, but was unsuitable for structure analysis. Since the normal vapour-diffusion method could not control the crystal morphology, gel-tube methods, both on earth and under microgravity, were applied for crystallization in order to control and improve the crystal quality. Whereas crystal form 1 was only slightly improved using this method, crystal form 2 was greatly improved and diffracted to 2.2 A resolution. Crystal form 2 contained a homodimer in the asymmetric unit, which was biologically essential. Its overall structure was similar to that of 1hti except for the flexible loop, which was located at the active centre Lys13.

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Year:  2005        PMID: 16511037      PMCID: PMC1952429          DOI: 10.1107/S1744309105008341

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  12 in total

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Authors:  D W Zhu; B Lorber; C Sauter; J D Ng; P Bénas; C Le Grimellec; R Giegé
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-04

2.  A test of macromolecular crystallization in microgravity: large well ordered insulin crystals.

Authors:  G E Borgstahl; A Vahedi-Faridi; J Lovelace; H D Bellamy; E H Snell
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-07-23

3.  A simplified counter diffusion method combined with a 1D simulation program for optimizing crystallization conditions.

Authors:  Hiroaki Tanaka; Koji Inaka; Shigeru Sugiyama; Sachiko Takahashi; Satoshi Sano; Masaru Sato; Susumu Yoshitomi
Journal:  J Synchrotron Radiat       Date:  2003-11-28       Impact factor: 2.616

4.  Improving quality and harvest period of protein crystals for structure-based drug design: effects of a gel and a magnetic field on bovine adenosine deaminase crystals.

Authors:  Takayoshi Kinoshita; Mitsuo Ataka; Masaichi Warizaya; Masahiro Neya; Takashi Fujii
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-06-27

Review 5.  Physical aspects of protein crystal growth investigated with the Advanced Protein Crystallization Facility in reduced-gravity environments.

Authors:  Alessandro Vergara; Bernard Lorber; Adriana Zagari; Richard Giegé
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-12-19

6.  On the computation of the fast rotation function.

Authors:  J Navaza
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1993-11-01

7.  Investigations on protein crystal growth by the gel acupuncture method.

Authors:  J M García-Ruiz; A Morena
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-07-01

8.  Crystallization of macromolecules in silica gels.

Authors:  R Cudney; S Patel; A McPherson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-07-01

9.  Triosephosphate isomerase from Plasmodium falciparum: the crystal structure provides insights into antimalarial drug design.

Authors:  S S Velanker; S S Ray; R S Gokhale; S Suma; H Balaram; P Balaram; M R Murthy
Journal:  Structure       Date:  1997-06-15       Impact factor: 5.006

10.  Crystal structure of recombinant human triosephosphate isomerase at 2.8 A resolution. Triosephosphate isomerase-related human genetic disorders and comparison with the trypanosomal enzyme.

Authors:  S C Mande; V Mainfroid; K H Kalk; K Goraj; J A Martial; W G Hol
Journal:  Protein Sci       Date:  1994-05       Impact factor: 6.725

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  7 in total

1.  Crystallization and preliminary X-ray crystallographic analysis of an artificial molten-globular-like triosephosphate isomerase protein of mixed phylogenetic origin.

Authors:  Venuka Durani Goyal; Pooja Yadav; Ashwani Kumar; Biplab Ghosh; Ravindra D Makde
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-10-25       Impact factor: 1.056

2.  Structure of apo-glyceraldehyde-3-phosphate dehydrogenase from Synechococcus PCC7942.

Authors:  Tomoya Kitatani; Yoshihiro Nakamura; Kei Wada; Takayoshi Kinoshita; Masahiro Tamoi; Shigeru Shigeoka; Toshiji Tada
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-07-29

3.  Drosophila model of human inherited triosephosphate isomerase deficiency glycolytic enzymopathy.

Authors:  Alicia M Celotto; Adam C Frank; Jacquelyn L Seigle; Michael J Palladino
Journal:  Genetics       Date:  2006-09-15       Impact factor: 4.562

4.  HORI: a web server to compute Higher Order Residue Interactions in protein structures.

Authors:  Pandurangan Sundaramurthy; Khader Shameer; Raashi Sreenivasan; Sunita Gakkhar; Ramanathan Sowdhamini
Journal:  BMC Bioinformatics       Date:  2010-01-18       Impact factor: 3.169

5.  Triose phosphate isomerase deficiency is caused by altered dimerization--not catalytic inactivity--of the mutant enzymes.

Authors:  Markus Ralser; Gino Heeren; Michael Breitenbach; Hans Lehrach; Sylvia Krobitsch
Journal:  PLoS One       Date:  2006-12-20       Impact factor: 3.240

6.  Structural effects of protein aging: terminal marking by deamidation in human triosephosphate isomerase.

Authors:  Ignacio de la Mora-de la Mora; Alfredo Torres-Larios; Sergio Enríquez-Flores; Sara-Teresa Méndez; Adriana Castillo-Villanueva; Saúl Gómez-Manzo; Gabriel López-Velázquez; Jaime Marcial-Quino; Angélica Torres-Arroyo; Itzhel García-Torres; Horacio Reyes-Vivas; Jesús Oria-Hernández
Journal:  PLoS One       Date:  2015-04-17       Impact factor: 3.240

7.  Crystallographic analysis of ground and space thermostable T1 lipase crystal obtained via counter diffusion method approach.

Authors:  Sayangku Nor Ariati Mohamad Aris; Adam Leow Thean Chor; Mohd Shukuri Mohamad Ali; Mahiran Basri; Abu Bakar Salleh; Raja Noor Zaliha Raja Abd Rahman
Journal:  Biomed Res Int       Date:  2014-01-02       Impact factor: 3.411

  7 in total

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