Literature DB >> 16511015

Purification, crystallization and preliminary crystallographic analysis of DehIVa, a dehalogenase from Burkholderia cepacia MBA4.

Jason W Schmidberger1, Aaron J Oakley, Jimmy S H Tsang, Matthew C J Wilce.   

Abstract

DehIVa is one of two dehalogenases produced by the soil- and water-borne bacterium Burkholderia cepacia MBA4. It acts to break down short-chain halogenated aliphatic acids through a nucleophilic attack and subsequent hydrolysis of an enzyme-substrate intermediate to remove the halide ions from L-enantiomers substituted at the C2 position (e.g L-2-monochloropropionic acid). Dehalogenases are an important group of enzymes that are responsible for breaking down a diverse range of halogenated environmental pollutants. The dhlIVa gene coding for DehIVa was expressed in Escherichia coli and the protein was purified and crystallized using the hanging-drop method. Crystals grown in PEG 4000 and ammonium sulfate diffracted to 3.1 A. The crystals had a primitive hexagonal unit cell, with unit-cell parameters a = b = 104.2, c = 135.8 A, alpha = beta = 90, gamma = 120 degrees. Determining this structure will provide valuable insights into the characterization of the catalytic mechanisms of this group of enzymes.

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Year:  2005        PMID: 16511015      PMCID: PMC1952274          DOI: 10.1107/S1744309105002472

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  18 in total

1.  Mutagenic analysis of the conserved residues in dehalogenase IVa of Burkholderia cepacia MBA4.

Authors:  B C Pang; J S Tsang
Journal:  FEMS Microbiol Lett       Date:  2001-10-16       Impact factor: 2.742

Review 2.  Microbial dehalogenation.

Authors:  D B Janssen; J E Oppentocht; G J Poelarends
Journal:  Curr Opin Biotechnol       Date:  2001-06       Impact factor: 9.740

3.  Sec-dependent and Sec-independent translocation of haloacid dehalogenase Chd1 of Burkholderia cepacia MBA4 in Escherichia coli.

Authors:  Jimmy S H Tsang; Johnny Sze
Journal:  FEMS Microbiol Lett       Date:  2002-06-04       Impact factor: 2.742

4.  Molecular biology of the 2-haloacid halidohydrolase IVa from Pseudomonas cepacia MBA4.

Authors:  U Murdiyatmo; W Asmara; J S Tsang; A J Baines; A T Bull; D J Hardman
Journal:  Biochem J       Date:  1992-05-15       Impact factor: 3.857

5.  Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

6.  Comprehensive site-directed mutagenesis of L-2-halo acid dehalogenase to probe catalytic amino acid residues.

Authors:  T Kurihara; J Q Liu; V Nardi-Dei; H Koshikawa; N Esaki; K Soda
Journal:  J Biochem       Date:  1995-06       Impact factor: 3.387

7.  Identification of the dimerization domain of dehalogenase IVa of Burkholderia cepacia MBA4.

Authors:  J S Tsang; B C Pang
Journal:  Appl Environ Microbiol       Date:  2000-08       Impact factor: 4.792

8.  Crystal structures of intermediates in the dehalogenation of haloalkanoates by L-2-haloacid dehalogenase.

Authors:  I S Ridder; H J Rozeboom; K H Kalk; B W Dijkstra
Journal:  J Biol Chem       Date:  1999-10-22       Impact factor: 5.157

9.  Haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26: X-ray crystallographic studies of dehalogenation of brominated substrates.

Authors:  Victor A Streltsov; Zbynek Prokop; Jirí Damborský; Yuji Nagata; Aaron Oakley; Matthew C J Wilce
Journal:  Biochemistry       Date:  2003-09-02       Impact factor: 3.162

10.  Crystal structure of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26 at 0.95 A resolution: dynamics of catalytic residues.

Authors:  Aaron J Oakley; Martin Klvana; Michal Otyepka; Yuji Nagata; Matthew C J Wilce; Jirí Damborský
Journal:  Biochemistry       Date:  2004-02-03       Impact factor: 3.162

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