Literature DB >> 16508082

Crystallization of leucyl-tRNA synthetase complexed with tRNALeu from the archaeon Pyrococcus horikoshii.

Ryuya Fukunaga1, Ryuichiro Ishitani, Osamu Nureki, Shigeyuki Yokoyama.   

Abstract

All five tRNALeu isoacceptors from the archaeon Pyrococcus horikoshii have been transcribed in vitro and purified. The leucyl-tRNA synthetase (LeuRS) from P. horikoshii was overexpressed in Escherichia coli and purified, and cocrystallizations with each of the tRNALeu isoacceptors were attempted. Cocrystals were obtained by the hanging-drop vapour-diffusion method, but only when the tRNALeu isoacceptor with the anticodon CAA was used. Electrophoretic analyses revealed that the crystals contain both LeuRS and tRNALeu, suggesting that they are LeuRS-tRNALeu complex crystals. A data set diffracting to 3.3 A resolution was collected from a single crystal at 100 K. The crystal belongs to the orthorhombic space group P2(1)2(1)2, with unit-cell parameters a = 118.18, b = 120.55, c = 231.13 A. The asymmetric unit is expected to contain two complexes of LeuRS-tRNALeu, with a corresponding crystal volume per protein weight of 2.9 A3 Da(-1) and a solvent content of 57.3%.

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Year:  2004        PMID: 16508082      PMCID: PMC1952391          DOI: 10.1107/S1744309104021827

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  21 in total

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Authors:  J F Chen; N N Guo; T Li; E D Wang; Y L Wang
Journal:  Biochemistry       Date:  2000-06-06       Impact factor: 3.162

2.  Structural and mechanistic basis of pre- and posttransfer editing by leucyl-tRNA synthetase.

Authors:  Tommie L Lincecum; Michael Tukalo; Anna Yaremchuk; Richard S Mursinna; Amy M Williams; Brian S Sproat; Wendy Van Den Eynde; Andreas Link; Serge Van Calenbergh; Morten Grøtli; Susan A Martinis; Stephen Cusack
Journal:  Mol Cell       Date:  2003-04       Impact factor: 17.970

3.  Adaptation of an orthogonal archaeal leucyl-tRNA and synthetase pair for four-base, amber, and opal suppression.

Authors:  J Christopher Anderson; Peter G Schultz
Journal:  Biochemistry       Date:  2003-08-19       Impact factor: 3.162

Review 4.  Editing of errors in selection of amino acids for protein synthesis.

Authors:  H Jakubowski; E Goldman
Journal:  Microbiol Rev       Date:  1992-09

5.  Crystallization and preliminary X-ray crystallographic study of leucyl-tRNA synthetase from the archaeon Pyrococcus horikoshii.

Authors:  Ryuya Fukunaga; Shigeyuki Yokoyama
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-09-23

6.  Unique recognition style of tRNA(Leu) by Haloferax volcanii leucyl-tRNA synthetase.

Authors:  A Soma; K Uchiyama; T Sakamoto; M Maeda; H Himeno
Journal:  J Mol Biol       Date:  1999-11-12       Impact factor: 5.469

7.  Insights into editing from an ile-tRNA synthetase structure with tRNAile and mupirocin.

Authors:  L F Silvian; J Wang; T A Steitz
Journal:  Science       Date:  1999-08-13       Impact factor: 47.728

8.  Structural basis for double-sieve discrimination of L-valine from L-isoleucine and L-threonine by the complex of tRNA(Val) and valyl-tRNA synthetase.

Authors:  S Fukai; O Nureki; S Sekine; A Shimada; J Tao; D G Vassylyev; S Yokoyama
Journal:  Cell       Date:  2000-11-22       Impact factor: 41.582

9.  The 2 A crystal structure of leucyl-tRNA synthetase and its complex with a leucyl-adenylate analogue.

Authors:  S Cusack; A Yaremchuk; M Tukalo
Journal:  EMBO J       Date:  2000-05-15       Impact factor: 11.598

10.  Crystal structures of the CP1 domain from Thermus thermophilus isoleucyl-tRNA synthetase and its complex with L-valine.

Authors:  Ryuya Fukunaga; Shuya Fukai; Ryuichiro Ishitani; Osamu Nureki; Shigeyuki Yokoyama
Journal:  J Biol Chem       Date:  2003-12-12       Impact factor: 5.157

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  2 in total

1.  Crystallization and preliminary X-ray crystallographic study of alanyl-tRNA synthetase from the archaeon Archaeoglobus fulgidus.

Authors:  Ryuya Fukunaga; Shigeyuki Yokoyama
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-02-23

2.  A unique insert of leucyl-tRNA synthetase is required for aminoacylation and not amino acid editing.

Authors:  Michael T Vu; Susan A Martinis
Journal:  Biochemistry       Date:  2007-04-04       Impact factor: 3.162

  2 in total

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