Literature DB >> 16504217

Tandemly repeated DNA: why should anyone care?

John A L Armour1.   

Abstract

Recent excitement over SNPs has tended to obscure the real advantages of studying tandemly repeated loci. In this commentary, I make the case for studying tandem repeats, concentrating on two major arguments. Firstly, tandemly repeated loci are unrivalled as a source of detailed mechanistic information in studies of variation and mutation, and are highly informative reporters of genomic instability in studies of induced mutation. Secondly, changes at many tandem repeats have important functional consequences, and in addition to examples of "strong" single-gene effects such as those at the triplet repeat disease loci, there may well be a much larger number of loci at which subtler functional effects remain to be discovered.

Mesh:

Year:  2006        PMID: 16504217     DOI: 10.1016/j.mrfmmm.2006.01.013

Source DB:  PubMed          Journal:  Mutat Res        ISSN: 0027-5107            Impact factor:   2.433


  12 in total

1.  Molecular cloning and characterization of NPR1 gene from Arachis hypogaea.

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Journal:  Mol Biol Rep       Date:  2014-05-20       Impact factor: 2.316

2.  WD-repeat instability and diversification of the Podospora anserina hnwd non-self recognition gene family.

Authors:  Damien Chevanne; Sven J Saupe; Corinne Clavé; Mathieu Paoletti
Journal:  BMC Evol Biol       Date:  2010-05-06       Impact factor: 3.260

Review 3.  Are all repeats created equal? Understanding DNA repeats at an individual level.

Authors:  Jinpu Yang; Fei Li
Journal:  Curr Genet       Date:  2016-06-03       Impact factor: 3.886

Review 4.  Air pollution and mutations in the germline: are humans at risk?

Authors:  Christopher M Somers; David N Cooper
Journal:  Hum Genet       Date:  2008-12-27       Impact factor: 4.132

5.  Altered methylation in tandem repeat element and elemental component levels in inhalable air particles.

Authors:  Lifang Hou; Xiao Zhang; Yinan Zheng; Sheng Wang; Chang Dou; Liqiong Guo; Hyang-Min Byun; Valeria Motta; John McCracken; Anaité Díaz; Choong-Min Kang; Petros Koutrakis; Pier Alberto Bertazzi; Jingyun Li; Joel Schwartz; Andrea A Baccarelli
Journal:  Environ Mol Mutagen       Date:  2013-11-23       Impact factor: 3.216

6.  Assessing the role of tandem repeats in shaping the genomic architecture of great apes.

Authors:  Marta Farré; Montserrat Bosch; Francesc López-Giráldez; Montserrat Ponsà; Aurora Ruiz-Herrera
Journal:  PLoS One       Date:  2011-11-04       Impact factor: 3.240

7.  Genetic variation and its role in malignancy.

Authors:  Bente A Talseth-Palmer; Rodney J Scott
Journal:  Int J Biomed Sci       Date:  2011-09

8.  A novel method for biodosimetry.

Authors:  Wael Abdel Megid; Martin G Ensenberger; Richard B Halberg; Stephen A Stanhope; Marijo G Kent-First; Tomas A Prolla; Jeff W Bacher
Journal:  Radiat Environ Biophys       Date:  2006-10-27       Impact factor: 2.017

9.  Intragenic tandem repeats in Daphnia magna: structure, function and distribution.

Authors:  Isabelle Colson; Louis Du Pasquier; Dieter Ebert
Journal:  BMC Res Notes       Date:  2009-10-06

10.  MUC5AC upstream complex repetitive region length polymorphisms are associated with susceptibility and clinical stage of gastric cancer.

Authors:  Chenghua Wang; Jinshen Wang; Yiqing Liu; Xueliang Guo; Chunqing Zhang
Journal:  PLoS One       Date:  2014-06-02       Impact factor: 3.240

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