Literature DB >> 16501229

The early history of the ubiquitin field.

Alexander Varshavsky1.   

Abstract

This is a personal account of the early history of ubiquitin research, by one of its protagonists. The field of ubiquitin and regulated protein degradation was created in the 1980s, largely through the complementary discoveries by the laboratory of A. Hershko (Technion, Haifa, Israel) and by my laboratory, then at MIT (Cambridge, MA). I describe the elegant insights by Hershko and his colleagues that yielded the initial understanding of ubiquitin conjugation and ubiquitin-mediated proteolysis in cell extracts, including the identification of E1, E2, and E3 enzymes. These advances were followed by a set of interconnected discoveries in my laboratory that revealed the biology of the ubiquitin system, i.e., its necessity for the protein degradation in vivo, its specific physiological functions (in the cell cycle, DNA repair, protein synthesis, transcriptional regulation, and stress responses), the source of its selectivity (specific degradation signals in short-lived proteins), and its key mechanistic attributes, such as the polyubiquitin chain and the subunit selectivity of protein degradation. The above biological (function-based) insights produced the main discovery of the physiological regulation by intracellular protein degradation. These advances caused the enormous expansion of the ubiquitin field in the 1990s. Together with the initial discovery of ubiquitin-mediated proteolysis by Hershko and coworkers, our biological discoveries in the 1980s led to a radically changed understanding of the logic of intracellular circuits, as it became clear that the control through regulated protein degradation rivals, and often surpasses in significance, the classical regulation through transcription and translation.

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Year:  2006        PMID: 16501229      PMCID: PMC2249785          DOI: 10.1110/ps.052012306

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  57 in total

1.  Peptides accelerate their uptake by activating a ubiquitin-dependent proteolytic pathway.

Authors:  G C Turner; F Du; A Varshavsky
Journal:  Nature       Date:  2000-06-01       Impact factor: 49.962

2.  An essential role of N-terminal arginylation in cardiovascular development.

Authors:  Yong Tae Kwon; Anna S Kashina; Ilia V Davydov; Rong-Gui Hu; Jee Young An; Jai Wha Seo; Fangyong Du; Alexander Varshavsky
Journal:  Science       Date:  2002-07-05       Impact factor: 47.728

Review 3.  The N-end rule and regulation of apoptosis.

Authors:  Alexander Varshavsky
Journal:  Nat Cell Biol       Date:  2003-05       Impact factor: 28.824

Review 4.  Back to the future with ubiquitin.

Authors:  Cecile M Pickart
Journal:  Cell       Date:  2004-01-23       Impact factor: 41.582

Review 5.  Proteasomes and their kin: proteases in the machine age.

Authors:  Cecile M Pickart; Robert E Cohen
Journal:  Nat Rev Mol Cell Biol       Date:  2004-03       Impact factor: 94.444

6.  The N-end rule pathway as a nitric oxide sensor controlling the levels of multiple regulators.

Authors:  Rong-Gui Hu; Jun Sheng; Xin Qi; Zhenming Xu; Terry T Takahashi; Alexander Varshavsky
Journal:  Nature       Date:  2005-10-13       Impact factor: 49.962

7.  Degradation of a cohesin subunit by the N-end rule pathway is essential for chromosome stability.

Authors:  H Rao; F Uhlmann; K Nasmyth; A Varshavsky
Journal:  Nature       Date:  2001-04-19       Impact factor: 49.962

8.  Degradation of DIAP1 by the N-end rule pathway is essential for regulating apoptosis.

Authors:  Mark Ditzel; Rebecca Wilson; Tencho Tenev; Anna Zachariou; Angela Paul; Emma Deas; Pascal Meier
Journal:  Nat Cell Biol       Date:  2003-05       Impact factor: 28.824

9.  A delayed leaf senescence mutant is defective in arginyl-tRNA:protein arginyltransferase, a component of the N-end rule pathway in Arabidopsis.

Authors:  Satoko Yoshida; Masaki Ito; Judy Callis; Ikuo Nishida; Akira Watanabe
Journal:  Plant J       Date:  2002-10       Impact factor: 6.417

10.  Female lethality and apoptosis of spermatocytes in mice lacking the UBR2 ubiquitin ligase of the N-end rule pathway.

Authors:  Yong Tae Kwon; Zanxian Xia; Jee Young An; Takafumi Tasaki; Ilia V Davydov; Jai Wha Seo; Jun Sheng; Youming Xie; Alexander Varshavsky
Journal:  Mol Cell Biol       Date:  2003-11       Impact factor: 4.272

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  33 in total

1.  Structure of the 26S proteasome from Schizosaccharomyces pombe at subnanometer resolution.

Authors:  Stefan Bohn; Florian Beck; Eri Sakata; Thomas Walzthoeni; Martin Beck; Ruedi Aebersold; Friedrich Förster; Wolfgang Baumeister; Stephan Nickell
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-22       Impact factor: 11.205

Review 2.  Using protein motion to read, write, and erase ubiquitin signals.

Authors:  Aaron H Phillips; Jacob E Corn
Journal:  J Biol Chem       Date:  2015-09-09       Impact factor: 5.157

3.  SPSB1-mediated HnRNP A1 ubiquitylation regulates alternative splicing and cell migration in EGF signaling.

Authors:  Feng Wang; Xing Fu; Peng Chen; Ping Wu; Xiaojuan Fan; Na Li; Hong Zhu; Ting-Ting Jia; Hongbin Ji; Zefeng Wang; Catherine C L Wong; Ronggui Hu; Jingyi Hui
Journal:  Cell Res       Date:  2017-01-13       Impact factor: 25.617

Review 4.  The protective and destructive roles played by molecular chaperones during ERAD (endoplasmic-reticulum-associated degradation).

Authors:  Jeffrey L Brodsky
Journal:  Biochem J       Date:  2007-06-15       Impact factor: 3.857

5.  Discovery of cellular regulation by protein degradation.

Authors:  Alexander Varshavsky
Journal:  J Biol Chem       Date:  2008-08-15       Impact factor: 5.157

6.  Insights into the molecular architecture of the 26S proteasome.

Authors:  Stephan Nickell; Florian Beck; Sjors H W Scheres; Andreas Korinek; Friedrich Förster; Keren Lasker; Oana Mihalache; Na Sun; István Nagy; Andrej Sali; Jürgen M Plitzko; Jose-Maria Carazo; Matthias Mann; Wolfgang Baumeister
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-06       Impact factor: 11.205

Review 7.  APC/C ubiquitin ligase: Functions and mechanisms in tumorigenesis.

Authors:  Morgan S Schrock; Benjamin R Stromberg; Luke Scarberry; Matthew K Summers
Journal:  Semin Cancer Biol       Date:  2020-03-09       Impact factor: 15.707

Review 8.  The N-end rule pathway and regulation by proteolysis.

Authors:  Alexander Varshavsky
Journal:  Protein Sci       Date:  2011-08       Impact factor: 6.725

9.  Hsp70 targets a cytoplasmic quality control substrate to the San1p ubiquitin ligase.

Authors:  Christopher J Guerriero; Kurt F Weiberth; Jeffrey L Brodsky
Journal:  J Biol Chem       Date:  2013-05-07       Impact factor: 5.157

Review 10.  Dynamic survey of mitochondria by ubiquitin.

Authors:  Mafalda Escobar-Henriques; Thomas Langer
Journal:  EMBO Rep       Date:  2014-02-25       Impact factor: 8.807

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