Literature DB >> 1649997

Structure of alpha-alpha-hairpins with short connections.

A V Efimov1.   

Abstract

This paper presents the results of detailed stereochemical analysis of structures and sequences of alpha-alpha-hairpins with short connections. It is shown that alpha-alpha-hairpins of each given type have very similar patterns of hydrophobic, hydrophilic and glycine residues in their amino acid sequences. These results can be used in the prediction of alpha-alpha-hairpin conformation as well as in protein design and engineering.

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Year:  1991        PMID： 1649997     DOI： 10.1093/protein/4.3.245

Source DB:  PubMed          Journal:  Protein Eng        ISSN： 0269-2139


  18 in total

1.  Design of three-dimensional domain-swapped dimers and fibrous oligomers.

Authors:  N L Ogihara; G Ghirlanda; J W Bryson; M Gingery; W F DeGrado; D Eisenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-13       Impact factor: 11.205

2.  The helix-hairpin-helix DNA-binding motif: a structural basis for non-sequence-specific recognition of DNA.

Authors:  A J Doherty; L C Serpell; C P Ponting
Journal:  Nucleic Acids Res       Date:  1996-07-01       Impact factor: 16.971

3.  ProRegIn: a regularity index for the selection of native-like tertiary structures of proteins.

Authors:  Lipi Thukral; Sandhya R Shenoy; Kumkum Bhushan; B Jayaram
Journal:  J Biosci       Date:  2007-01       Impact factor: 1.826

4.  Differences in the amino acid distributions of 3(10)-helices and alpha-helices.

Authors:  M E Karpen; P L de Haseth; K E Neet
Journal:  Protein Sci       Date:  1992-10       Impact factor: 6.725

5.  Analysis of loop boundaries using different local structure assignment methods.

Authors:  Manoj Tyagi; Aurélie Bornot; Bernard Offmann; Alexandre G de Brevern
Journal:  Protein Sci       Date:  2009-09       Impact factor: 6.725

6.  From coiled coils to small globular proteins: design of a native-like three-helix bundle.

Authors:  J W Bryson; J R Desjarlais; T M Handel; W F DeGrado
Journal:  Protein Sci       Date:  1998-06       Impact factor: 6.725

Review 7.  Helix capping.

Authors:  R Aurora; G D Rose
Journal:  Protein Sci       Date:  1998-01       Impact factor: 6.725

8.  PROMOTIF--a program to identify and analyze structural motifs in proteins.

Authors:  E G Hutchinson; J M Thornton
Journal:  Protein Sci       Date:  1996-02       Impact factor: 6.725

9.  Patterns and conformations of commonly occurring supersecondary structures (basic motifs) in protein data bank.

Authors:  Z Sun; B Jiang
Journal:  J Protein Chem       Date:  1996-10

10.  Removal of a consensus proline is not sufficient to allow tetratricopeptide repeat oligomerization.

Authors:  Amber L Bakkum; R Blake Hill
Journal:  Protein Sci       Date:  2017-07-25       Impact factor: 6.725
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