Literature DB >> 16498697

Evolution of the genetic code in yeasts.

Isabel Miranda1, Raquel Silva, Manuel A S Santos.   

Abstract

During the last 30 years, a number of genetic code alterations have been uncovered in bacteria and in the mitochondria and cytoplasm of various eukaryotes, invalidating the hypothesis that the genetic code is universal and frozen. In the mitochondria of most yeasts, the UGA stop codon is decoded as tryptophan and the four leucine codons of the CUN family (N = any nucleotide) are decoded as threonine. Recently, a unique genetic code change involving the decoding of the leucine CUG codon as serine was discovered in the cytoplasm of Candida and Debaryomyces species, indicating that the genetic code of yeasts may be under specific evolutionary pressures whose molecular nature is not yet fully understood. This genetic code alteration is mediated by a novel serine-tRNA that acquired a leucine 5'-CAG-3' anticodon (ser-tRNACAG) through insertion of an adenosine in the intron of its gene. This event, which occurred 272 +/- 25 million years ago, reprogrammed the identity of approximately 30 000 CUG codons existent in the ancestor of these yeasts and had a profound impact on the evolution of the genus Candida and of other species. Here, we review the most recent results and concepts arising from the study of this genetic code change and highlight how its study is changing our views of the evolution of the genetic code. Copyright 2006 John Wiley & Sons, Ltd.

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Year:  2006        PMID: 16498697     DOI: 10.1002/yea.1350

Source DB:  PubMed          Journal:  Yeast        ISSN: 0749-503X            Impact factor:   3.239


  31 in total

Review 1.  Cellular mechanisms that control mistranslation.

Authors:  Noah M Reynolds; Beth A Lazazzera; Michael Ibba
Journal:  Nat Rev Microbiol       Date:  2010-12       Impact factor: 60.633

2.  Genetic code ambiguity confers a selective advantage on Acinetobacter baylyi.

Authors:  Jamie M Bacher; William F Waas; David Metzgar; Valérie de Crécy-Lagard; Paul Schimmel
Journal:  J Bacteriol       Date:  2007-07-06       Impact factor: 3.490

Review 3.  A gripping tale of ribosomal frameshifting: extragenic suppressors of frameshift mutations spotlight P-site realignment.

Authors:  John F Atkins; Glenn R Björk
Journal:  Microbiol Mol Biol Rev       Date:  2009-03       Impact factor: 11.056

4.  Parasexuality and ploidy change in Candida tropicalis.

Authors:  Riyad N H Seervai; Stephen K Jones; Matthew P Hirakawa; Allison M Porman; Richard J Bennett
Journal:  Eukaryot Cell       Date:  2013-10-11

5.  Unveiling the structural basis for translational ambiguity tolerance in a human fungal pathogen.

Authors:  Rita Rocha; Pedro José Barbosa Pereira; Manuel A S Santos; Sandra Macedo-Ribeiro
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-08       Impact factor: 11.205

6.  Molecular reconstruction of a fungal genetic code alteration.

Authors:  Denisa D Mateus; João A Paredes; Yaiza Español; Lluís Ribas de Pouplana; Gabriela R Moura; Manuel A S Santos
Journal:  RNA Biol       Date:  2013-04-17       Impact factor: 4.652

7.  Measuring transcription factor-binding site turnover: a maximum likelihood approach using phylogenies.

Authors:  Wolfgang Otto; Peter F Stadler; Francesc López-Giraldéz; Jeffrey P Townsend; Vincent J Lynch; Günter P Wagner
Journal:  Genome Biol Evol       Date:  2009-05-25       Impact factor: 3.416

Review 8.  Was Wright right? The canonical genetic code is an empirical example of an adaptive peak in nature; deviant genetic codes evolved using adaptive bridges.

Authors:  David M Seaborg
Journal:  J Mol Evol       Date:  2010-08-15       Impact factor: 2.395

9.  The yeast PNC1 longevity gene is up-regulated by mRNA mistranslation.

Authors:  Raquel M Silva; Iven C N Duarte; João A Paredes; Tatiana Lima-Costa; Michel Perrot; Hélian Boucherie; Brian J Goodfellow; Ana C Gomes; Denisa D Mateus; Gabriela R Moura; Manuel A S Santos
Journal:  PLoS One       Date:  2009-04-17       Impact factor: 3.240

10.  Innate immune and chemically triggered oxidative stress modifies translational fidelity.

Authors:  Nir Netzer; Jeffrey M Goodenbour; Alexandre David; Kimberly A Dittmar; Richard B Jones; Jeffrey R Schneider; David Boone; Eva M Eves; Marsha R Rosner; James S Gibbs; Alan Embry; Brian Dolan; Suman Das; Heather D Hickman; Peter Berglund; Jack R Bennink; Jonathan W Yewdell; Tao Pan
Journal:  Nature       Date:  2009-11-26       Impact factor: 49.962

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